DDBJ-KEGG-PDBj: pdb2rdf.xml

File pdb2rdf.xml, 3.4 KB (added by tore.eriksson, 9 years ago)

PDB2rdf output example

Line 
1<?xml version="1.0"?>
2<rdf:RDF xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:pdbx="http://pdbj.protein.osaka-u.ac.jp/XML/pdbmlplus/pdbMLplus_v32.xsd" xmlns:pdb="http://www.pdbj.org/ontology/pdb.owl#" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:ro="http://www.obofoundry.org/ro/ro.owl#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:bibo="http://purl.org/ontology/bibo/" xmlns:dc="http://purl.org/dc/elements/1.1/">
3<pdb:Entry rdf:about="http://www.pdbj.org/1a00">
4<dc:created>1997-12-08</dc:created>
5<dc:modified>2009-02-24</dc:modified>
6<foaf:topic>
7<pdb:Structure>
8<ro:contains>
9<polymer rdf:about="http://www.pdbj.org/1a00#1" xmlns="http://www.pdbj.org/ontology/pdb.owl#">
10<rdfs:comment>HEMOGLOBIN (ALPHA CHAIN)</rdfs:comment>
11<ro:derived-from>
12<pdb:Gene>
13<rdfs:label>HUMAN BETA GLOBIN</rdfs:label>
14<ro:derived-from>
15<rdf:Resource rdf:about="http://www.ncbi.nlm.nih.gov/taxonomy/9606">
16<rdfs:label>human</rdfs:label>
17<rdfs:label>Homo sapiens</rdfs:label>
18</rdf:Resource>
19</ro:derived-from>
20</pdb:Gene>
21</ro:derived-from>
22<ro:derived_from>
23<pdb:Cell>
24<rdfs:label>RED BLOOD CELL</rdfs:label>
25</pdb:Cell>
26</ro:derived_from>
27<ro:derived_from>
28<pdb:Organ>
29<rdfs:label>BLOOD</rdfs:label>
30</pdb:Organ>
31</ro:derived_from>
32<rdfs:seeAlso rdf:resource="http://purl.uniprot.org/uniprot/P69905" />
33<ro:derived-from>
34<rdf:Resource rdf:about="http://www.ncbi.nlm.nih.gov/taxonomy/9606">
35<rdfs:label>human</rdfs:label>
36<rdfs:label>Homo sapiens</rdfs:label>
37</rdf:Resource>
38</ro:derived-from>
39</polymer>
40</ro:contains>
41<ro:contains>
42<polymer rdf:about="http://www.pdbj.org/1a00#2" xmlns="http://www.pdbj.org/ontology/pdb.owl#">
43<rdfs:comment>HEMOGLOBIN (BETA CHAIN)</rdfs:comment>
44<ro:derived-from>
45<pdb:Gene>
46<rdfs:label>HUMAN BETA GLOBIN</rdfs:label>
47<ro:derived-from>
48<rdf:Resource rdf:about="http://www.ncbi.nlm.nih.gov/taxonomy/9606">
49<rdfs:label>human</rdfs:label>
50<rdfs:label>Homo sapiens</rdfs:label>
51</rdf:Resource>
52</ro:derived-from>
53</pdb:Gene>
54</ro:derived-from>
55<ro:derived_from>
56<pdb:Cell>
57<rdfs:label>RED BLOOD CELL</rdfs:label>
58</pdb:Cell>
59</ro:derived_from>
60<ro:derived_from>
61<pdb:Organ>
62<rdfs:label>BLOOD</rdfs:label>
63</pdb:Organ>
64</ro:derived_from>
65<rdfs:seeAlso rdf:resource="http://purl.uniprot.org/uniprot/P68871" />
66<ro:derived-from>
67<rdf:Resource rdf:about="http://www.ncbi.nlm.nih.gov/taxonomy/9606">
68<rdfs:label>human</rdfs:label>
69<rdfs:label>Homo sapiens</rdfs:label>
70</rdf:Resource>
71</ro:derived-from>
72</polymer>
73</ro:contains>
74<ro:contains>
75<non-polymer rdf:about="http://www.pdbj.org/1a00#3" xmlns="http://www.pdbj.org/ontology/pdb.owl#">
76<rdfs:comment>PROTOPORPHYRIN IX CONTAINING FE</rdfs:comment>
77</non-polymer>
78</ro:contains>
79<ro:contains>
80<water rdf:about="http://www.pdbj.org/1a00#4" xmlns="http://www.pdbj.org/ontology/pdb.owl#">
81<rdfs:comment>water</rdfs:comment>
82</water>
83</ro:contains>
84<foaf:page>
85<bibo:AcademicArticle rdf:about="urn:doi:10.1021/bi9708702">
86<rdfs:seeAlso rdf:resource="http://ncbi.nlm.nih.gov/pubmed/9521756" />
87<rdfs:label>High-resolution crystal structures of human hemoglobin with mutations at tryptophan 37beta: structural basis for a high-affinity T-state,.</rdfs:label>
88</bibo:AcademicArticle>
89</foaf:page>
90</pdb:Structure>
91</foaf:topic>
92</pdb:Entry>
93</rdf:RDF>