/MetaMap/public_mm/bin/SKRrun -L 2008 -w /MetaMap/public_mm/lexicon /MetaMap/public_mm/bin/metamap08.BINARY -I -Z 08 MetaMap (2008) Control options: mm_data_year=08 show_cuis Berkeley DB databases (normal strict 08 model) are open. Static variants will come from table varsan. Variants: Adj/noun ONLY. Accessing lexicon /MetaMap/public_mm/lexicon/data/lexiconStatic2008. Variant generation mode: static. Established connection to Tagger Server on localhost. Processing 00000000.tx.1: What antibodies have been used to detect protein TLR4 ? Phrase: "What antibodies" Meta Candidates (2): 1000 C0003241:Antibodies [Amino Acid, Peptide, or Protein,Immunologic Factor,Indicator, Reagent, or Diagnostic Aid] 966 C1621287:antibody (antibody activity) [Molecular Function] Meta Mapping (1000): 1000 C0003241:Antibodies [Amino Acid, Peptide, or Protein,Immunologic Factor,Indicator, Reagent, or Diagnostic Aid] Phrase: "have" Phrase: "been" Phrase: "used" Meta Candidates (4): 966 C0042153:use (utilization qualifier) [Functional Concept] 966 C0457083:Use (Usage) [Functional Concept] 966 C1524063:Using (Use of) [Functional Concept] 966 C1947944:Use (Use - dosing instruction imperative) [Intellectual Product] Meta Mapping (966): 966 C0457083:Use (Usage) [Functional Concept] Meta Mapping (966): 966 C1947944:Use (Use - dosing instruction imperative) [Intellectual Product] Meta Mapping (966): 966 C1524063:Using (Use of) [Functional Concept] Meta Mapping (966): 966 C0042153:use (utilization qualifier) [Functional Concept] Phrase: "to" Phrase: "detect" Meta Candidates (2): 966 C0442726:Detected [Finding] 966 C1511790:Detected (Detection) [Therapeutic or Preventive Procedure] Meta Mapping (966): 966 C0442726:Detected [Finding] Meta Mapping (966): 966 C1511790:Detected (Detection) [Therapeutic or Preventive Procedure] Phrase: "protein TLR4 ?" Meta Candidates (2): 694 C0033684:Protein (Proteins) [Amino Acid, Peptide, or Protein,Biologically Active Substance] 694 C0202202:Protein NOS (Protein measurement) [Laboratory Procedure] Meta Mapping (694): 694 C0202202:Protein NOS (Protein measurement) [Laboratory Procedure] Meta Mapping (694): 694 C0033684:Protein (Proteins) [Amino Acid, Peptide, or Protein,Biologically Active Substance] /MetaMap/public_mm/bin/SKRrun -L 2008 -w /MetaMap/public_mm/lexicon /MetaMap/public_mm/bin/metamap08.BINARY -I -Z 08 MetaMap (2008) Control options: mm_data_year=08 show_cuis Berkeley DB databases (normal strict 08 model) are open. Static variants will come from table varsan. Variants: Adj/noun ONLY. Accessing lexicon /MetaMap/public_mm/lexicon/data/lexiconStatic2008. Variant generation mode: static. Established connection to Tagger Server on localhost. Processing 00000000.tx.1: What biological substances have been used to measure toxicity in response to cytarabine ? Phrase: "What biological substances" Meta Candidates (4): 983 C0005522:Biological substance (Biological Products) [Biologically Active Substance,Pharmacologic Substance] 861 C0439861:Substances (Substance) [Substance] 694 C0005532:Biological (Biologic) [Biomedical Occupation or Discipline] 694 C0205460:biological [Functional Concept] Meta Mapping (983): 983 C0005522:Biological substance (Biological Products) [Biologically Active Substance,Pharmacologic Substance] Phrase: "have" Phrase: "been" Phrase: "used" Meta Candidates (4): 966 C0042153:use (utilization qualifier) [Functional Concept] 966 C0457083:Use (Usage) [Functional Concept] 966 C1524063:Using (Use of) [Functional Concept] 966 C1947944:Use (Use - dosing instruction imperative) [Intellectual Product] Meta Mapping (966): 966 C0457083:Use (Usage) [Functional Concept] Meta Mapping (966): 966 C1947944:Use (Use - dosing instruction imperative) [Intellectual Product] Meta Mapping (966): 966 C1524063:Using (Use of) [Functional Concept] Meta Mapping (966): 966 C0042153:use (utilization qualifier) [Functional Concept] Phrase: "to" Phrase: "measure" Meta Candidates (3): 1000 C0079809:Measure (Measures) [Functional Concept,Quantitative Concept] 1000 C0242485:Measure (Measurement) [Functional Concept] 966 C0444706:Measured [Qualitative Concept] Meta Mapping (1000): 1000 C0242485:Measure (Measurement) [Functional Concept] Meta Mapping (1000): 1000 C0079809:Measure (Measures) [Functional Concept,Quantitative Concept] Phrase: "toxicity" Meta Candidates (7): 1000 C0040539:toxicity (Toxicity aspects) [Quantitative Concept] 1000 C0600688:Toxicity (Toxic effect) [Injury or Poisoning] 928 C1407029:Toxic [Qualitative Concept] 907 C0032346:Poison (Poisons) [Hazardous or Poisonous Substance] 907 C1548769:Poison (Poison Risk Codes) [Intellectual Product] 907 C1550590:poison (Poison RIsk) [Idea or Concept] 900 C0040549:Toxin [Biologically Active Substance,Hazardous or Poisonous Substance] Meta Mapping (1000): 1000 C0600688:Toxicity (Toxic effect) [Injury or Poisoning] Meta Mapping (1000): 1000 C0040539:toxicity (Toxicity aspects) [Quantitative Concept] Phrase: "in response to" Meta Candidates (2): 861 C0871261:response [Clinical Attribute] 861 C1704632:Response (Disease Response) [Finding] Meta Mapping (861): 861 C1704632:Response (Disease Response) [Finding] Meta Mapping (861): 861 C0871261:response [Clinical Attribute] Phrase: "cytarabine ?" Meta Candidates (2): 1000 C0010711:Cytarabine [Nucleic Acid, Nucleoside, or Nucleotide,Pharmacologic Substance] 944 C0591320:Cytosar [Hazardous or Poisonous Substance,Nucleic Acid, Nucleoside, or Nucleotide,Pharmacologic Substance] Meta Mapping (1000): 1000 C0010711:Cytarabine [Nucleic Acid, Nucleoside, or Nucleotide,Pharmacologic Substance] /MetaMap/public_mm/bin/SKRrun -L 2008 -w /MetaMap/public_mm/lexicon /MetaMap/public_mm/bin/metamap08.BINARY -I -Z 08 MetaMap (2008) Control options: mm_data_year=08 show_cuis Berkeley DB databases (normal strict 08 model) are open. Static variants will come from table varsan. Variants: Adj/noun ONLY. Accessing lexicon /MetaMap/public_mm/lexicon/data/lexiconStatic2008. Variant generation mode: static. Established connection to Tagger Server on localhost. Processing 00000000.tx.1: What cell or tissue types express members of the mammalian TIM gene family ? Phrase: "What cell" Meta Candidates (6): 1000 C0007634:Cell (Cells) [Cell] 1000 C1269647:Cell (Entire cell) [Cell] 1000 C1704653:Cell (Cell Device Component) [Medical Device] 1000 C1948049:Cell [Spatial Concept] 928 C0178539:Cellular [Functional Concept] 900 C1516377:Cellularity [Qualitative Concept] Meta Mapping (1000): 1000 C1948049:Cell [Spatial Concept] Meta Mapping (1000): 1000 C1704653:Cell (Cell Device Component) [Medical Device] Meta Mapping (1000): 1000 C0007634:Cell (Cells) [Cell] Meta Mapping (1000): 1000 C1269647:Cell (Entire cell) [Cell] Phrase: "or" Phrase: "tissue types" Meta Candidates (10): 1000 C0040300:Tissue Types (Body tissue) [Tissue] tissue 983 C0019633:Tissue Typing (Histocompatibility Testing) [Laboratory Procedure] 861 C0332307:Types (Type - attribute) [Qualitative Concept] 861 C1547928:Tissue (Tissue Specimen Code) [Intellectual Product] 827 C0441704:Typing (Typing Classification) [Health Care Activity] 827 C0872404:Typing (Keyboard Typing) [Occupational Activity] 827 C1547052:*Type [Quantitative Concept] 827 C1552651:Type (Type - ParameterizedDataType) [Intellectual Product] 827 C1849011:TYPE (SPONDYLOMETAEPIPHYSEAL DYSPLASIA, SHORT LIMB-HAND TYPE) [Disease or Syndrome] Meta Mapping (1000): 1000 C0040300:Tissue Types (Body tissue) [Tissue] Phrase: "express" Meta Candidates (3): 966 C0017262:Expressed (Gene Expression) [Genetic Function] 966 C1171362:Expressed (protein expression) [Genetic Function] 966 C1515670:Expressed (mRNA Expression) [Genetic Function] Meta Mapping (966): 966 C0017262:Expressed (Gene Expression) [Genetic Function] Meta Mapping (966): 966 C1515670:Expressed (mRNA Expression) [Genetic Function] Meta Mapping (966): 966 C1171362:Expressed (protein expression) [Genetic Function] Phrase: "members" Meta Candidates (2): 966 C0680022:member [Population Group] 966 C1551024:member (Role Class - member) [Group] Meta Mapping (966): 966 C1551024:member (Role Class - member) [Group] Meta Mapping (966): 966 C0680022:member [Population Group] Phrase: "of the mammalian TIM gene family ?" Meta Candidates (6): 861 C1517488:Gene Family [Gene or Genome] 812 C0015576:Family [Conceptual Entity,Family Group] 741 C0241888:Familial [Functional Concept] 687 C0600269:Familiarity [Mental Process] 645 C0017337:Gene (Genes) [Gene or Genome] 645 C0024660:Mammalian (Mammals) [Mammal] Meta Mapping (824): 645 C0024660:Mammalian (Mammals) [Mammal] 861 C1517488:Gene Family [Gene or Genome] /MetaMap/public_mm/bin/SKRrun -L 2008 -w /MetaMap/public_mm/lexicon /MetaMap/public_mm/bin/metamap08.BINARY -I -Z 08 MetaMap (2008) Control options: mm_data_year=08 show_cuis Berkeley DB databases (normal strict 08 model) are open. Static variants will come from table varsan. Variants: Adj/noun ONLY. Accessing lexicon /MetaMap/public_mm/lexicon/data/lexiconStatic2008. Variant generation mode: static. Established connection to Tagger Server on localhost. Processing 00000000.tx.1: What diseases are associated with lysosomal abnormalities in the nervous system ? Phrase: "What diseases" Meta Candidates (4): 1000 C0012634:Diseases (Disease) [Disease or Syndrome] 928 C1422572:MAL (MKL1 gene) [Gene or Genome] 928 C1424810:Mal (TIRAP gene) [Gene or Genome] 928 C1836721:MALS [Finding] Meta Mapping (1000): 1000 C0012634:Diseases (Disease) [Disease or Syndrome] Phrase: "are" Phrase: "associated" Meta Candidates (3): 1000 C0332281:Associated (Associated with) [Qualitative Concept] 966 C0750490:Associate (Associate - relationship) [Idea or Concept] 966 C1706221:Associate (Associate - assistant) [Professional or Occupational Group] Meta Mapping (1000): 1000 C0332281:Associated (Associated with) [Qualitative Concept] Phrase: "with lysosomal abnormalities" Meta Candidates (7): 861 C0000768:Abnormalities (Congenital Abnormality) [Congenital Abnormality] 861 C0000769:abnormalities (teratologic) [Functional Concept] 827 C1704258:Abnormality [Finding] 777 C0205161:Abnormal [Functional Concept] 777 C1550458:Abnormal (Observation Interpretation - Abnormal) [Idea or Concept] 694 C0521450:Lysosomal [Body Location or Region] 623 C0024369:Lysosome (Lysosomes) [Cell Component] Meta Mapping (888): 694 C0521450:Lysosomal [Body Location or Region] 861 C0000768:Abnormalities (Congenital Abnormality) [Congenital Abnormality] Meta Mapping (888): 694 C0521450:Lysosomal [Body Location or Region] 861 C0000769:abnormalities (teratologic) [Functional Concept] Phrase: "in the nervous system ?" Meta Candidates (12): 1000 C0027763:Nervous System (Nervous system structure) [Body System] 1000 C1269560:Nervous system (Entire nervous system) [Body System] 944 C0205494:Neurologic [Functional Concept] 907 C0027855:Neurology (Neurology speciality) [Biomedical Occupation or Discipline] 907 C1555868:Neurology (Psychiatry & Neurology Physicians) [Professional or Occupational Group] 861 C0027769:Nervous (Nervousness) [Finding] 861 C0449913:System [Functional Concept] 861 C0599851:Nervous (relating to nervous system) [Functional Concept] 861 C1553451:System (Entity Code - System) [Manufactured Object] 861 C1704459:System (Device Component System) [Medical Device] 789 C0205373:Systemic [Functional Concept] 789 C0220922:systematic [Functional Concept] Meta Mapping (1000): 1000 C1269560:Nervous system (Entire nervous system) [Body System] Meta Mapping (1000): 1000 C0027763:Nervous System (Nervous system structure) [Body System] /MetaMap/public_mm/bin/SKRrun -L 2008 -w /MetaMap/public_mm/lexicon /MetaMap/public_mm/bin/metamap08.BINARY -I -Z 08 MetaMap (2008) Control options: mm_data_year=08 show_cuis Berkeley DB databases (normal strict 08 model) are open. Static variants will come from table varsan. Variants: Adj/noun ONLY. Accessing lexicon /MetaMap/public_mm/lexicon/data/lexiconStatic2008. Variant generation mode: static. Established connection to Tagger Server on localhost. Processing 00000000.tx.1: What drugs have been tested in mouse models of Alzheimer's disease ? Phrase: "What drugs" Meta Candidates (5): 1000 C0013227:Drugs (Pharmaceutical Preparations) [Pharmacologic Substance] 966 C1254351:Drug (Pharmacologic Substance) [Pharmacologic Substance] 928 C0031336:Pharmaceutical (Pharmacy) [Biomedical Occupation or Discipline] 928 C1553890:Pharmaceutical (Pharmaceutical - ActMedicalServiceCode) [Intellectual Product] 900 C0456386:Medicament [Pharmacologic Substance] Meta Mapping (1000): 1000 C0013227:Drugs (Pharmaceutical Preparations) [Pharmacologic Substance] Phrase: "have" Phrase: "been" Phrase: "tested" Meta Candidates (5): 966 C0022885:Test (Laboratory Procedures) [Laboratory Procedure] 966 C0039593:Test (Testing) [Functional Concept] 966 C0392366:Tests [Intellectual Product] 966 C0456984:test (Test Result) [Finding] 966 C1378537:TEST [Medical Device] Meta Mapping (966): 966 C0022885:Test (Laboratory Procedures) [Laboratory Procedure] Meta Mapping (966): 966 C1378537:TEST [Medical Device] Meta Mapping (966): 966 C0456984:test (Test Result) [Finding] Meta Mapping (966): 966 C0039593:Test (Testing) [Functional Concept] Meta Mapping (966): 966 C0392366:Tests [Intellectual Product] Phrase: "in mouse" Meta Candidates (4): 1000 C0025914:Mouse (House mice) [Mammal] 1000 C0025929:mouse (Laboratory mice) [Mammal] 1000 C0026809:Mouse (Mus) [Mammal] 1000 C1455722:Mouse (Mouse antigen) [Immunologic Factor] Meta Mapping (1000): 1000 C0025914:Mouse (House mice) [Mammal] Meta Mapping (1000): 1000 C0025929:mouse (Laboratory mice) [Mammal] Meta Mapping (1000): 1000 C1455722:Mouse (Mouse antigen) [Immunologic Factor] Meta Mapping (1000): 1000 C0026809:Mouse (Mus) [Mammal] Phrase: "models" Meta Candidates (3): 1000 C0026336:Models (Study models) [Intellectual Product,Research Device] 1000 C0026339:Models (Biological Models) [Intellectual Product,Research Device] 966 C0870071:Modeling [Intellectual Product,Research Activity] Meta Mapping (1000): 1000 C0026339:Models (Biological Models) [Intellectual Product,Research Device] Meta Mapping (1000): 1000 C0026336:Models (Study models) [Intellectual Product,Research Device] Phrase: "of Alzheimer's disease ?" Meta Candidates (6): 1000 C0002395:Alzheimer's Disease [Disease or Syndrome] Alzheimer 861 C0012634:Disease [Disease or Syndrome] 805 C1422572:MAL (MKL1 gene) [Gene or Genome] 805 C1424810:Mal (TIRAP gene) [Gene or Genome] 805 C1836721:MALS [Finding] Meta Mapping (1000): 1000 C0002395:Alzheimer's Disease [Disease or Syndrome] /MetaMap/public_mm/bin/SKRrun -L 2008 -w /MetaMap/public_mm/lexicon /MetaMap/public_mm/bin/metamap08.BINARY -I -Z 08 MetaMap (2008) Control options: mm_data_year=08 show_cuis Berkeley DB databases (normal strict 08 model) are open. Static variants will come from table varsan. Variants: Adj/noun ONLY. Accessing lexicon /MetaMap/public_mm/lexicon/data/lexiconStatic2008. Variant generation mode: static. Established connection to Tagger Server on localhost. Processing 00000000.tx.1: What centrosomal genes are implicated in diseases of brain development ? Phrase: "What centrosomal genes" Meta Candidates (2): 861 C0017337:Genes [Gene or Genome] 623 C0242608:Centrosome [Cell Component] Meta Mapping (853): 623 C0242608:Centrosome [Cell Component] 861 C0017337:Genes [Gene or Genome] Phrase: "are" Phrase: "implicated" Phrase: "in diseases" Meta Candidates (4): 1000 C0012634:Diseases (Disease) [Disease or Syndrome] 928 C1422572:MAL (MKL1 gene) [Gene or Genome] 928 C1424810:Mal (TIRAP gene) [Gene or Genome] 928 C1836721:MALS [Finding] Meta Mapping (1000): 1000 C0012634:Diseases (Disease) [Disease or Syndrome] Phrase: "of brain development ?" Meta Candidates (8): 1000 C1160340:brain development [Organ or Tissue Function] 861 C0020119:Development (Human Development) [Physiologic Function] 861 C0243107:development (development aspects) [Physiologic Function] 861 C0678723:Development (Biologic Development) [Organism Function] 861 C1527148:Development [Functional Concept] 789 C0458003:Developmental [Qualitative Concept] 694 C0006104:Brain [Body Part, Organ, or Organ Component] 694 C1269537:Brain (Entire brain) [Body Part, Organ, or Organ Component] Meta Mapping (1000): 1000 C1160340:brain development [Organ or Tissue Function] /MetaMap/public_mm/bin/SKRrun -L 2008 -w /MetaMap/public_mm/lexicon /MetaMap/public_mm/bin/metamap08.BINARY -I -Z 08 MetaMap (2008) Control options: mm_data_year=08 show_cuis Berkeley DB databases (normal strict 08 model) are open. Static variants will come from table varsan. Variants: Adj/noun ONLY. Accessing lexicon /MetaMap/public_mm/lexicon/data/lexiconStatic2008. Variant generation mode: static. Established connection to Tagger Server on localhost. Processing 00000000.tx.1: What molecular functions does helicase protein NS3 play in HCV (Hepatitis C virus) ? Phrase: "What molecular functions" Meta Candidates (8): 983 C1148560:molecular_function [Molecular Function] 861 C0542341:Functions (Function) [Functional Concept] 827 C0031843:function (physiological aspects) [Physiologic Function] 827 C0700205:FUNCTION (Function Axis) [Classification] 827 C1705273:Function (Mathematical Operator) [Intellectual Product] 777 C0205245:Functional [Functional Concept] 694 C1521991:Molecular [Qualitative Concept] 623 C0567416:Molecule [Substance] Meta Mapping (983): 983 C1148560:molecular_function [Molecular Function] Phrase: "does" Phrase: "helicase protein NS3" Meta Candidates (4): 827 C1860991:NS3 (NOONAN SYNDROME 3) [Disease or Syndrome] 660 C0033684:Protein (Proteins) [Amino Acid, Peptide, or Protein,Biologically Active Substance] 660 C0202202:Protein NOS (Protein measurement) [Laboratory Procedure] 660 C0920283:helicase [Amino Acid, Peptide, or Protein,Enzyme] Meta Mapping (851): 660 C0920283:helicase [Amino Acid, Peptide, or Protein,Enzyme] 660 C0202202:Protein NOS (Protein measurement) [Laboratory Procedure] 827 C1860991:NS3 (NOONAN SYNDROME 3) [Disease or Syndrome] Meta Mapping (851): 660 C0920283:helicase [Amino Acid, Peptide, or Protein,Enzyme] 660 C0033684:Protein (Proteins) [Amino Acid, Peptide, or Protein,Biologically Active Substance] 827 C1860991:NS3 (NOONAN SYNDROME 3) [Disease or Syndrome] Phrase: "play" Meta Candidates (2): 1000 C0032214:Play [Daily or Recreational Activity] 966 C0600138:Plays (Does play) [Finding] Meta Mapping (1000): 1000 C0032214:Play [Daily or Recreational Activity] Phrase: "in HCV" Meta Candidates (1): 1000 C0220847:HCV (Hepatitis C virus) [Virus] Meta Mapping (1000): 1000 C0220847:HCV (Hepatitis C virus) [Virus] Phrase: "(Hepatitis C virus" Meta Candidates (9): 1000 C0220847:Hepatitis C virus [Virus] Hepatitis C 983 C0079500:Hepatitis C viruses (Hepatitis C-Like Viruses) [Virus] 913 C0019186:Hepatitis virus (Hepatitis Viruses) [Virus] 901 C0019196:Hepatitis C [Disease or Syndrome] 827 C0019158:Hepatitis [Disease or Syndrome] 827 C0042769:virus (Virus Diseases) [Disease or Syndrome] 827 C0042776:Virus [Virus] 793 C0521026:viruses (Viral) [Functional Concept] Meta Mapping (1000): 1000 C0220847:Hepatitis C virus [Virus] Phrase: ") ?" /MetaMap/public_mm/bin/SKRrun -L 2008 -w /MetaMap/public_mm/lexicon /MetaMap/public_mm/bin/metamap08.BINARY -I -Z 08 MetaMap (2008) Control options: mm_data_year=08 show_cuis Berkeley DB databases (normal strict 08 model) are open. Static variants will come from table varsan. Variants: Adj/noun ONLY. Accessing lexicon /MetaMap/public_mm/lexicon/data/lexiconStatic2008. Variant generation mode: static. Established connection to Tagger Server on localhost. Processing 00000000.tx.1: What mutations in apolipoprotein genes are associated with disease ? Phrase: "What mutations" Meta Candidates (3): 1000 C0026882:Mutations (Mutation) [Genetic Function] 966 C1705285:Mutation (Mutation Abnormality) [Cell or Molecular Dysfunction] 916 C0596988:Mutant [Cell or Molecular Dysfunction] Meta Mapping (1000): 1000 C0026882:Mutations (Mutation) [Genetic Function] Phrase: "in apolipoprotein genes" Meta Candidates (4): 983 C1445865:Apolipoprotein gene [Gene or Genome] 861 C0017337:Genes [Gene or Genome] 694 C0003591:Apolipoprotein (Apolipoproteins) [Amino Acid, Peptide, or Protein,Biologically Active Substance] 694 C1325281:apolipoprotein (apolipoprotein activity) [Molecular Function] Meta Mapping (983): 983 C1445865:Apolipoprotein gene [Gene or Genome] Phrase: "are" Phrase: "associated" Meta Candidates (3): 1000 C0332281:Associated (Associated with) [Qualitative Concept] 966 C0750490:Associate (Associate - relationship) [Idea or Concept] 966 C1706221:Associate (Associate - assistant) [Professional or Occupational Group] Meta Mapping (1000): 1000 C0332281:Associated (Associated with) [Qualitative Concept] Phrase: "with disease ?" Meta Candidates (4): 1000 C0012634:Disease [Disease or Syndrome] 944 C1422572:MAL (MKL1 gene) [Gene or Genome] 944 C1424810:Mal (TIRAP gene) [Gene or Genome] 944 C1836721:MALS [Finding] Meta Mapping (1000): 1000 C0012634:Disease [Disease or Syndrome] /MetaMap/public_mm/bin/SKRrun -L 2008 -w /MetaMap/public_mm/lexicon /MetaMap/public_mm/bin/metamap08.BINARY -I -Z 08 MetaMap (2008) Control options: mm_data_year=08 show_cuis Berkeley DB databases (normal strict 08 model) are open. Static variants will come from table varsan. Variants: Adj/noun ONLY. Accessing lexicon /MetaMap/public_mm/lexicon/data/lexiconStatic2008. Variant generation mode: static. Established connection to Tagger Server on localhost. Processing 00000000.tx.1: Which pathways are possibly involved in the disease ADPKD ? Phrase: "Which pathways" Meta Candidates (2): 1000 C1704259:Pathways (Biochemical Pathway) [Molecular Function] 1000 C1705987:Pathways (Pathway) [Conceptual Entity] Meta Mapping (1000): 1000 C1704259:Pathways (Biochemical Pathway) [Molecular Function] Meta Mapping (1000): 1000 C1705987:Pathways (Pathway) [Conceptual Entity] Phrase: "are" Phrase: "possibly" Meta Candidates (1): 1000 C0332149:Possibly (Possible) [Qualitative Concept] Meta Mapping (1000): 1000 C0332149:Possibly (Possible) [Qualitative Concept] Phrase: "involved" Meta Candidates (1): 1000 C1314939:Involved (Involvement with) [Functional Concept] Meta Mapping (1000): 1000 C1314939:Involved (Involvement with) [Functional Concept] Phrase: "in the disease ADPKD ?" Meta Candidates (5): 861 C0085413:ADPKD (Polycystic Kidney, Autosomal Dominant) [Congenital Abnormality,Disease or Syndrome] 694 C0012634:Disease [Disease or Syndrome] 638 C1422572:MAL (MKL1 gene) [Gene or Genome] 638 C1424810:Mal (TIRAP gene) [Gene or Genome] 638 C1836721:MALS [Finding] Meta Mapping (888): 694 C0012634:Disease [Disease or Syndrome] 861 C0085413:ADPKD (Polycystic Kidney, Autosomal Dominant) [Congenital Abnormality,Disease or Syndrome] /MetaMap/public_mm/bin/SKRrun -L 2008 -w /MetaMap/public_mm/lexicon /MetaMap/public_mm/bin/metamap08.BINARY -I -Z 08 MetaMap (2008) Control options: mm_data_year=08 show_cuis Berkeley DB databases (normal strict 08 model) are open. Static variants will come from table varsan. Variants: Adj/noun ONLY. Accessing lexicon /MetaMap/public_mm/lexicon/data/lexiconStatic2008. Variant generation mode: static. Established connection to Tagger Server on localhost. Processing 00000000.tx.1: What proteins does epsin1 interact with during endocytosis ? Phrase: "What proteins" Meta Candidates (2): 1000 C0033684:Proteins [Amino Acid, Peptide, or Protein,Biologically Active Substance] 966 C0202202:Protein NOS (Protein measurement) [Laboratory Procedure] Meta Mapping (1000): 1000 C0033684:Proteins [Amino Acid, Peptide, or Protein,Biologically Active Substance] Phrase: "does" Phrase: "epsin1" Phrase: "interact" Phrase: "with" Phrase: "during endocytosis ?" Meta Candidates (1): 1000 C0014139:Endocytosis [Cell Function] Meta Mapping (1000): 1000 C0014139:Endocytosis [Cell Function] /MetaMap/public_mm/bin/SKRrun -L 2008 -w /MetaMap/public_mm/lexicon /MetaMap/public_mm/bin/metamap08.BINARY -I -Z 08 MetaMap (2008) Control options: mm_data_year=08 show_cuis Berkeley DB databases (normal strict 08 model) are open. Static variants will come from table varsan. Variants: Adj/noun ONLY. Accessing lexicon /MetaMap/public_mm/lexicon/data/lexiconStatic2008. Variant generation mode: static. Established connection to Tagger Server on localhost. Processing 00000000.tx.1: What Streptococcus pneumoniae strains are resistent to penicillin and erythromycin ? Phrase: "What Streptococcus pneumoniae strains" Meta Candidates (10): 827 C0080194:Strains (Muscle strain) [Injury or Poisoning] 827 C0456178:Strains (Microbiology subtype strains) [Intellectual Product] 793 C1510453:strain (strain symptom) [Sign or Symptom] 793 C1518614:Strain (Organism Strain) [Mammal] 734 C0038410:Streptococcus pneumoniae [Bacterium] 734 C0370030:Streptococcus pneumoniae (Streptococcus pneumoniae antigen) [Immunologic Factor] 660 C0032285:Pneumoniae (Pneumonia) [Disease or Syndrome] 660 C0038402:Streptococcus [Bacterium] 560 C0024109:Lung [Body Part, Organ, or Organ Component] 560 C1278908:Lung (Entire lung) [Body Part, Organ, or Organ Component] Meta Mapping (901): 734 C0038410:Streptococcus pneumoniae [Bacterium] 827 C0456178:Strains (Microbiology subtype strains) [Intellectual Product] Meta Mapping (901): 734 C0038410:Streptococcus pneumoniae [Bacterium] 827 C0080194:Strains (Muscle strain) [Injury or Poisoning] Meta Mapping (901): 734 C0370030:Streptococcus pneumoniae (Streptococcus pneumoniae antigen) [Immunologic Factor] 827 C0456178:Strains (Microbiology subtype strains) [Intellectual Product] Meta Mapping (901): 734 C0370030:Streptococcus pneumoniae (Streptococcus pneumoniae antigen) [Immunologic Factor] 827 C0080194:Strains (Muscle strain) [Injury or Poisoning] Phrase: "are" Phrase: "resistent" Meta Candidates (5): 1000 C0332325:Resistant [Functional Concept] 1000 C1550464:resistent [Idea or Concept] 916 C0237834:Resistance (Psychotherapeutic Resistance) [Mental Process] 916 C0683598:resistance (social resistance) [Social Behavior] 916 C1522618:Resistance (resistance mechanism) [Clinical Attribute] Meta Mapping (1000): 1000 C0332325:Resistant [Functional Concept] Meta Mapping (1000): 1000 C1550464:resistent [Idea or Concept] Phrase: "to penicillin" Meta Candidates (2): 1000 C0030842:Penicillin (Penicillins) [Antibiotic,Organic Chemical] 1000 C0220892:Penicillin [Antibiotic,Organic Chemical] Meta Mapping (1000): 1000 C0220892:Penicillin [Antibiotic,Organic Chemical] Meta Mapping (1000): 1000 C0030842:Penicillin (Penicillins) [Antibiotic,Organic Chemical] Phrase: "and" Phrase: "erythromycin ?" Meta Candidates (4): 1000 C0014806:Erythromycin [Antibiotic,Organic Chemical] 944 C0014824:Erythrosin (Erythrosine) [Indicator, Reagent, or Diagnostic Aid,Organic Chemical] 944 C0699338:Erythrocin [Antibiotic,Carbohydrate] 944 C0699339:Ilotycin [Antibiotic,Organic Chemical] Meta Mapping (1000): 1000 C0014806:Erythromycin [Antibiotic,Organic Chemical] /MetaMap/public_mm/bin/SKRrun -L 2008 -w /MetaMap/public_mm/lexicon /MetaMap/public_mm/bin/metamap08.BINARY -I -Z 08 MetaMap (2008) Control options: mm_data_year=08 show_cuis Berkeley DB databases (normal strict 08 model) are open. Static variants will come from table varsan. Variants: Adj/noun ONLY. Accessing lexicon /MetaMap/public_mm/lexicon/data/lexiconStatic2008. Variant generation mode: static. Established connection to Tagger Server on localhost. Processing 00000000.tx.1: What signs or symptoms of anxiety disorder are related to lipid levels ? Phrase: "What signs" Meta Candidates (5): 1000 C0220912:signs (Aspects of signs) [Functional Concept] 1000 C0220913:Signs (Manufactured sign) [Manufactured Object] 1000 C0311392:SIGNS (Physical findings) [Sign or Symptom] 966 C1547188:Sign (Language Ability - Sign) [Idea or Concept] 916 C1710082:Signal [Conceptual Entity] Meta Mapping (1000): 1000 C0220912:signs (Aspects of signs) [Functional Concept] Meta Mapping (1000): 1000 C0220913:Signs (Manufactured sign) [Manufactured Object] Meta Mapping (1000): 1000 C0311392:SIGNS (Physical findings) [Sign or Symptom] Phrase: "or" Phrase: "symptoms" Meta Candidates (3): 1000 C0683368:symptoms (Symptoms aspect) [Functional Concept] 1000 C1457887:Symptoms [Sign or Symptom] 916 C0231220:Symptomatic [Functional Concept] Meta Mapping (1000): 1000 C1457887:Symptoms [Sign or Symptom] Meta Mapping (1000): 1000 C0683368:symptoms (Symptoms aspect) [Functional Concept] Phrase: "of anxiety disorder" Meta Candidates (4): 1000 C0003469:Anxiety disorder NOS (Anxiety Disorders) [Mental or Behavioral Dysfunction] 861 C0003467:Anxiety [Mental Process] 861 C0012634:Disorder (Disease) [Disease or Syndrome] 861 C1963064:Anxiety (Anxiety Adverse Event) [Finding] Meta Mapping (1000): 1000 C0003469:Anxiety disorder NOS (Anxiety Disorders) [Mental or Behavioral Dysfunction] Phrase: "are" Phrase: "related" Meta Candidates (4): 1000 C0439849:Related (Relationships) [Qualitative Concept] 1000 C0445223:Related (Related personal status) [Finding] 966 C0163712:Relate [Organic Chemical] 966 C2003855:Relating [Functional Concept] Meta Mapping (1000): 1000 C0445223:Related (Related personal status) [Finding] Meta Mapping (1000): 1000 C0439849:Related (Relationships) [Qualitative Concept] Phrase: "to lipid levels ?" Meta Candidates (5): 983 C0428460:Lipid level (Lipid level - finding) [Laboratory or Test Result] 861 C0441889:Levels (Degree) [Qualitative Concept] 827 C0456079:Level (Disease classification level) [Classification] 694 C0023779:Lipid (Lipids) [Lipid] 661 C0523744:Lipids NOS (Lipids measurement) [Laboratory Procedure] Meta Mapping (983): 983 C0428460:Lipid level (Lipid level - finding) [Laboratory or Test Result] /MetaMap/public_mm/bin/SKRrun -L 2008 -w /MetaMap/public_mm/lexicon /MetaMap/public_mm/bin/metamap08.BINARY -I -Z 08 MetaMap (2008) Control options: mm_data_year=08 show_cuis Berkeley DB databases (normal strict 08 model) are open. Static variants will come from table varsan. Variants: Adj/noun ONLY. Accessing lexicon /MetaMap/public_mm/lexicon/data/lexiconStatic2008. Variant generation mode: static. Established connection to Tagger Server on localhost. Processing 00000000.tx.1: What toxicities are associated with cytarabine ? Phrase: "What toxicities" Meta Candidates (7): 966 C0040539:toxicity (Toxicity aspects) [Quantitative Concept] 966 C0600688:Toxicity (Toxic effect) [Injury or Poisoning] 916 C1407029:Toxic [Qualitative Concept] 900 C0032346:Poison (Poisons) [Hazardous or Poisonous Substance] 900 C1548769:Poison (Poison Risk Codes) [Intellectual Product] 900 C1550590:poison (Poison RIsk) [Idea or Concept] 893 C0040549:Toxin [Biologically Active Substance,Hazardous or Poisonous Substance] Meta Mapping (966): 966 C0600688:Toxicity (Toxic effect) [Injury or Poisoning] Meta Mapping (966): 966 C0040539:toxicity (Toxicity aspects) [Quantitative Concept] Phrase: "are" Phrase: "associated" Meta Candidates (3): 1000 C0332281:Associated (Associated with) [Qualitative Concept] 966 C0750490:Associate (Associate - relationship) [Idea or Concept] 966 C1706221:Associate (Associate - assistant) [Professional or Occupational Group] Meta Mapping (1000): 1000 C0332281:Associated (Associated with) [Qualitative Concept] Phrase: "with cytarabine ?" Meta Candidates (2): 1000 C0010711:Cytarabine [Nucleic Acid, Nucleoside, or Nucleotide,Pharmacologic Substance] 944 C0591320:Cytosar [Hazardous or Poisonous Substance,Nucleic Acid, Nucleoside, or Nucleotide,Pharmacologic Substance] Meta Mapping (1000): 1000 C0010711:Cytarabine [Nucleic Acid, Nucleoside, or Nucleotide,Pharmacologic Substance] /MetaMap/public_mm/bin/SKRrun -L 2008 -w /MetaMap/public_mm/lexicon /MetaMap/public_mm/bin/metamap08.BINARY -I -Z 08 MetaMap (2008) Control options: mm_data_year=08 show_cuis Berkeley DB databases (normal strict 08 model) are open. Static variants will come from table varsan. Variants: Adj/noun ONLY. Accessing lexicon /MetaMap/public_mm/lexicon/data/lexiconStatic2008. Variant generation mode: static. Established connection to Tagger Server on localhost. Processing 00000000.tx.1: What tumor types are associated with Rb1 mutations ? Phrase: "What tumor types" Meta Candidates (6): 861 C0332307:Types (Type - attribute) [Qualitative Concept] 827 C1547052:*Type [Quantitative Concept] 827 C1552651:Type (Type - ParameterizedDataType) [Intellectual Product] 827 C1849011:TYPE (SPONDYLOMETAEPIPHYSEAL DYSPLASIA, SHORT LIMB-HAND TYPE) [Disease or Syndrome] 694 C0027651:Tumor (Neoplasm) [Neoplastic Process] 694 C1578706:Tumor (Specimen Source Codes - tumor) [Intellectual Product] Meta Mapping (888): 694 C0027651:Tumor (Neoplasm) [Neoplastic Process] 861 C0332307:Types (Type - attribute) [Qualitative Concept] Meta Mapping (888): 694 C1578706:Tumor (Specimen Source Codes - tumor) [Intellectual Product] 861 C0332307:Types (Type - attribute) [Qualitative Concept] Phrase: "are" Phrase: "associated" Meta Candidates (3): 1000 C0332281:Associated (Associated with) [Qualitative Concept] 966 C0750490:Associate (Associate - relationship) [Idea or Concept] 966 C1706221:Associate (Associate - assistant) [Professional or Occupational Group] Meta Mapping (1000): 1000 C0332281:Associated (Associated with) [Qualitative Concept] Phrase: "with Rb1 mutations ?" Meta Candidates (5): 861 C0026882:Mutations (Mutation) [Genetic Function] 827 C1705285:Mutation (Mutation Abnormality) [Cell or Molecular Dysfunction] 777 C0596988:Mutant [Cell or Molecular Dysfunction] 694 C0080113:RB1 (Retinoblastoma Protein) [Amino Acid, Peptide, or Protein,Biologically Active Substance] 694 C0694889:RB1 (RB1 gene) [Gene or Genome] Meta Mapping (888): 694 C0694889:RB1 (RB1 gene) [Gene or Genome] 861 C0026882:Mutations (Mutation) [Genetic Function] Meta Mapping (888): 694 C0080113:RB1 (Retinoblastoma Protein) [Amino Acid, Peptide, or Protein,Biologically Active Substance] 861 C0026882:Mutations (Mutation) [Genetic Function]