| Version 2 (modified by akinjo, 3 years ago) |
|---|
URL
- PDBj http://www.pdbj.org/PDBID (PDBID = 1gof, 1a00, ...)
- KEGG http://togows.dbcls.jp/entry/kegg-DBNAME/ENTRYID
- DDBJ http://togows.dbcls.jp/entry/ddbj/ENTRYID
- UniProt http://www.uniprot.org/uniprot/ENTRYID
- PubMed http://www.ncbi.nlm.nih.gov/pubmed/ENTRYID
Attachments
-
taxonomy.dat
(0.6 MB) - added by akinjo
3 years ago.
PDB2Tax_id mapping
-
pubmed.ttl.gz
(391.9 KB) - added by akinjo
3 years ago.
PDB2PubMed turtle
-
pdb2rdf.2.xsl
(5.2 KB) - added by tore.eriksson
3 years ago.
PDB2rdf stylesheet v 0.3 - working prototype
-
pdb2rdf.xsl
(5.6 KB) - added by tore.eriksson
3 years ago.
PDB2rdf sstylesheet v 0.4 - working prototype
-
pdb2rdf.xml
(3.4 KB) - added by tore.eriksson
3 years ago.
PDB2rdf output example
-
ddbj_rdf_sample.zip
(8.3 KB) - added by yshigemo
3 years ago.
-
ddbj_rdf_sample2.zip
(201.6 KB) - added by yshigemo
3 years ago.
-
1a00-noatom.xml
(0.6 MB) - added by akinjo
3 years ago.
Example PDBML (noatom) file
-
pdbx-v32.xsd
(3.2 MB) - added by akinjo
3 years ago.
PDBML XML Schema
-
pdbx-v32.owl
(5.3 MB) - added by akinjo
3 years ago.
PDB OWL ontology translated from PDBML schema
-
PDBML2rdf.xsl
(477.0 KB) - added by akinjo
3 years ago.
PDBML -> RDF converter (requires XSLT 2.0)
-
1a00-noatom.rdf
(2.5 MB) - added by akinjo
3 years ago.
An example of RDF generated by PDBML2rdf.xsl
-
pdbx2owl.xsl
(12.6 KB) - added by akinjo
3 years ago.
PDBML schema -> OWL ontology converter (XSL stylesheet)
