Version 2 (modified by ktym, 9 years ago)

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Datasets

Lists currently available and still missing datasets (as Linked Data / RDF).

Available resources

We should categorize followings according to their format (e.g. RDF) and relationships.

  • Bio2RDF
    • Ensembl - genes
    • OBO - GO terms, ChEBI compounds
    • NCBI - genes, sequences, mesh terms, disease (omim), pubmed articles
    • KEGG - pathways, genes, enzymes, compounds, drugs, glycans, reactions
    • MGI - genes
    • PDB - structures
    • UniProt - proteins, keywords, taxonomy
  • Linked Data

Missing resources

  • Taxonomy <-> Pathway module