Changes between Version 8 and Version 9 of OWL

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Timestamp:
2010/02/11 16:48:15 (9 years ago)
Author:
jerven
Comment:

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  • OWL

    v8 v9  
    5353A product meant for this is 
    5454[http://clarkparsia.com/pellet/icv] 
     55 
     56In the end I used pellet 2.0.1 for validating the RDF of UniProt,org to see if it is valid according to our OWL file. 
     57 
     58./pellet.sh consistency "http://purl.uniprot.org/uniprot/P12345" "ftp://ftp.uniprot.org//pub/databases/uniprot/current_release/rdf/core.owl"  
     59 
     60Which found many errors. Most where datatype errors. e.g. "2009-11" Year-Month is not a valid ISO8601 standard. I changed these to "P2009Y11M" which is valid period encoding. 
     61The OWL now has a comment  describing what is meant here and why we use this. 
     62 
     63For uniprot.org we now also have a script that checks a 1000 entries for correctness. 
     64{{{ 
     65#!/bin/bash 
     66cd $PELLETDIR 
     67LIMIT=1000 
     68UNIPROT="http://localhost:8080" 
     69for ac in `curl "$UNIPROT/uniprot/?query=*&format=list&limit=$LIMIT"`; do 
     70        echo $ac 
     71        `curl "$UNIPROT/uniprot/$ac.rdf" -o $ac.rdf`; 
     72        ./pellet.sh consistency -v $ac.rdf ~/Documents/workspace/uniprot-rdf/src/core.owl 
     73        rm $ac.rdf; 
     74done}}} 
     75