Changes between Version 17 and Version 18 of TextMiningDayFour

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Timestamp:
2010/02/19 11:33:57 (14 years ago)
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  • TextMiningDayFour

    v17 v18  
    1111{{{ 
    1212<set> 
    13         <article> 
    14                 <PMID>19694806</PMID> 
    15                  
    16                 ... <sentence> 
    17                         Treatment with 5-aza-2'-deoxycytidine and/or the histone deacetylase inhibitor trichostatin A increased  
    18                         <entity_name gena_id="GMM040544" species="Mus musculus" db_site="EntrezGene:13138|MGI:101864|PIR:S59630|SWISS-PROT:Q62165|TrEMBL:Q8BPJ7" type="gene_prod" confidence="1" filter_confidence="0.284761" id="entity-10" gene_symbol="Dag1">Dag1</entity_name> 
    19                         mRNA expression levels in myoblasts, and methylation decreased promoter activity in vitro. 
    20                      </sentence> 
    21 }}}                   
    22                       
    23                  
     13 <article> 
     14  <PMID>19694806</PMID> 
     15 
     16    ... <sentence> 
     17        Treatment with 5-aza-2'-deoxycytidine and/or the histone deacetylase inhibitor trichostatin A increased  
     18        <entity_name gena_id="GMM040544" species="Mus musculus" db_site="EntrezGene:13138|MGI:101864|PIR:S59630|SWISS-PROT:Q62165|TrEMBL:Q8BPJ7" type="gene_prod" confidence="1" filter_confidence="0.284761" id="entity-10" gene_symbol="Dag1">Dag1</entity_name> 
     19        mRNA expression levels in myoblasts, and methylation decreased promoter activity in vitro. 
     20        </sentence> 
     21}}} 
     22 
     23 
    2424== How to generate RDF-friendly URIs for recognized entities == 
    2525 
     
    6969... 
    7070 
    71 <http://togows.dbcls.jp/entry/ncbi-pubmed/22333111> <*:hasSentences> _:hasS1 
    72 <http://togows.dbcls.jp/entry/ncbi-pubmed/22333111> <*:hasSentences> _:hasS2 
    73 <http://togows.dbcls.jp/entry/ncbi-pubmed/22333111> <*:hasSentences> _:hasS3 
     71<http://togows.dbcls.jp/entry/ncbi-pubmed/22333111> <http://docman.dbcls.jp/textmining#hasSentences> _:hasS1 
     72<http://togows.dbcls.jp/entry/ncbi-pubmed/22333111> <http://docman.dbcls.jp/textmining#hasSentences> _:hasS2 
     73<http://togows.dbcls.jp/entry/ncbi-pubmed/22333111> <http://docman.dbcls.jp/textmining#hasSentences> _:hasS3 
    7474... 
    7575 
    76 _:hasS1 <*:hasSubject> _:sbj1 
    77 _:hasS1 <*:hasVerb> _:verb1 
    78 _:hasS1 <*:hasObject> _:obj1 
     76_:hasS1 <http://docman.dbcls.jp/textmining#hasSubject> _:sbj1 
     77_:hasS1 <http://docman.dbcls.jp/textmining#hasVerb> _:verb1 
     78_:hasS1 <http://docman.dbcls.jp/textmining#hasObject> _:obj1 
    7979_:sbj1 <http://www.w3.org/2000/01/rdf-schema#label> "peripheral lymphocytes" 
    8080_:verb1 <http://www.w3.org/2000/01/rdf-schema#label> "secreting" 
    8181_:obj1 <http://www.w3.org/2000/01/rdf-schema#label> "a specific cytokine" 
    82  
    8382 
    8483