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Group activities: Day One

Group activities: Day One

Reflect RDFa snippets

Idea 1 (interlaced with the text):

<div xmlns:sioc="http://rdfs.org/sioc/ns#" typeof="sioc:Item">
<span class='reflect_protein'><a rel="sioc:topic" resource="http://purl.uniprot.org/uniprot/P05113"></a>IL-5</span>
</div>

Idea 2 (at the end of the document, non-redundant):

<div xmlns:sioc="http://rdfs.org/sioc/ns#" typeof="sioc:Item">
<span id='reflectEntity0'>9606.ENSP00000231454</span>
<a rel="sioc:topic" resource="http://purl.uniprot.org/uniprot/P05113"></a>
</div>

Whatizit RDFa service

IL-5 Example: http://whatizit.neurocommons.org/index.py/text_query?pipeline=whatizitEBIMedDiseaseChemicals&query=IL-5&format=atag&max_results=10

Converted to Turtle: WhatizitAsTurtle

This uses a W3 service ( http://www.w3.org/2007/08/pyRdfa)

Uniprot RDF

http://www.uniprot.org/uniprot/P12345.n4

uniprot:P12345
  rdf:type Protein
  alternativeName 
    rdf:type Structured_Name
    fullName "Transaminase A"
  citation <http://purl.uniprot.org/citations/4030726>
    rdf:type Journal_Citation
    title 
      "Aspartate aminotransferase isozymes from rabbit liver. Purification 
       and properties."
    author "Kuramitsu S."
    author "Inoue K."
    author "Kondo K."
    author "Aki K."
    author "Kagamiyama H."
    skos:exactMatch <http://purl.uniprot.org/medline/85289123>
    skos:exactMatch <http://purl.uniprot.org/pubmed/4030726>
    date 1985
    name "J. Biochem."
    volume 97
    pages "1337-1345"
    +rdf:type Citation_Statement
    +scope "PROTEIN SEQUENCE"
    +context 
      rdf:type Tissue
      rdfs:label "Liver"

Pubmed RDF @ TogoWS

http://togows.dbcls.jp/entry/pubmed/4030726.ttl

<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#pmid>	"4030726" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://www.w3.org/2000/01/rdf-schema#label>	"pmid:4030726" .          
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://purl.org/dc/elements/1.1/title>	"pmid:4030726" .          
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://purl.org/dc/elements/1.1/identifier>	<http://pubmed.org/4030726> .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#own>	"NLM" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#stat>	"MEDLINE" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#da>	"1985-10-09" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#dcom>	"1985-10-09" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#lr>	"2007-12-19" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#vi>	"97" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://prismstandard.org/namespaces/2.0/basic/volume>	"97" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#dp>	"1985 May" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://prismstandard.org/namespaces/2.0/basic/prism:publicationDate>	"1985-05" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#ti>	"Aspartate aminotransferase isozymes from rabbit liver. Purification and properties." .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://purl.org/dc/elements/1.1/title>	"Aspartate aminotransferase isozymes from rabbit liver. Purification and properties." .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#pg>	"1337-45" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://prismstandard.org/namespaces/2.0/basic/startingPage>	"1337" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#ab>	"Cytosolic and mitochondrial isozymes of aspartate aminotransferase (L-aspartate:2-oxoglutarate aminotransferase [EC 2.6.1.1] ) were purified to homogeneity from rabbit liver. The rabbit liver isozymes were closely similar to the corresponding isozymes from other sources, including human heart, pig heart, chicken heart, and rat liver, in their molecular weights, absorption spectra, amino acid compositions, isoelectric points, and Michaelis constants for the substrates. The NH2-terminal amino acid sequences of rabbit liver isozymes were identified up to 30 residues, and showed some differences from those of the corresponding isozymes obtained from other animals so far studied." .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#ad>	"" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#fau>	"Kuramitsu, S" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://purl.org/dc/terms/creator>	"Kuramitsu, S" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#fau>	"Inoue, K" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://purl.org/dc/terms/creator>	"Inoue, K" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#fau>	"Kondo, K" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://purl.org/dc/terms/creator>	"Kondo, K" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#fau>	"Aki, K" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://purl.org/dc/terms/creator>	"Aki, K" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#fau>	"Kagamiyama, H" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://purl.org/dc/terms/creator>	"Kagamiyama, H" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#au>	"Kuramitsu S" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#au>	"Inoue K" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#au>	"Kondo K" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#au>	"Aki K" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#au>	"Kagamiyama H" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#pt>	"Journal Article Research Support, Non-U.S. Gov't" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#pl>	"JAPAN" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#ta>	"J Biochem" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://prismstandard.org/namespaces/2.0/basic/publicationName>	"J Biochem" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#jt>	"Journal of biochemistry" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#jid>	"0376600" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#rn>	"0 (Isoenzymes)" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#sb>	"IM" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#mh>	"Amino Acid Sequence" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#mh>	"Amino Acids/analysis" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#mh>	"Animals" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#mh>	"Aspartate Aminotransferases/*isolation & purification/metabolism" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#mh>	"Isoelectric Point" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#mh>	"Isoenzymes/*isolation & purification/metabolism" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#mh>	"Kinetics" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#mh>	"Liver/*enzymology" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#mh>	"Molecular Weight" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#mh>	"Rabbits" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#mh>	"Spectrum Analysis" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#edat>	"1985-05-01" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#mhda>	"1985-05-01 00:01" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#crdt>	"1985-05-01 00:00" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#pst>	"ppublish" .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#so>	"J Biochem. 1985 May;97(5):1337-45." .
<http://togows.dbcls.jp/entry/ncbi-pubmed/4030726>	<http://togows.dbcls.jp/ns/ncbi-pubmed#la>	"eng" .

Pubmed Linked Data @bio2rf

http://bio2rdf.org/citations:4030726

http://bio2rdf.org/citations:4030726 	
       http://bio2rdf.org/bio2rdf_resource:linkedToFrom 	
                http://bio2rdf.org/uniprot:P12343
		http://bio2rdf.org/uniprot:P12343_1
		http://bio2rdf.org/uniprot:P12343_10
		http://bio2rdf.org/uniprot:P12343_6
		http://bio2rdf.org/uniprot:P12345
		http://bio2rdf.org/uniprot:P12345_1
		http://bio2rdf.org/uniprot:P12345_A
	http://bio2rdf.org/bio2rdf_resource:url http://bio2rdf.org/html/citations:4030726 (Non-RDF URI)
	http://creativecommons.org/ns#license 	http://bio2rdf.org/license/citations:4030726
	http://purl.uniprot.org/core/author 	
                Aki K.
		Inoue K.
		Kagamiyama H.
		Kondo K.
		Kuramitsu S.
	http://purl.uniprot.org/core/date 	1985
	http://purl.uniprot.org/core/name 	J. Biochem.
	http://purl.uniprot.org/core/pages 	1337-1345
	http://purl.uniprot.org/core/title 	Aspartate aminotransferase isozymes from rabbit liver. Purification and properties.
	http://purl.uniprot.org/core/volume 	97
	http://www.w3.org/1999/02/22-rdf-syntax-ns#type 	http://bio2rdf.org/core:Journal_Citation
	http://www.w3.org/2002/07/owl#sameAs 	http://bio2rdf.org/medline:85289123 
                                                http://bio2rdf.org/pubmed:4030726

Pubmed Linked Data @Uniprot

http://www.uniprot.org/citations/4030726.rdf

@prefix <http://purl.uniprot.org/core/>
@prefix rdf <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
@prefix rdfs <http://www.w3.org/2000/01/rdf-schema#>
@prefix owl <http://www.w3.org/2002/07/owl#>
@prefix skos <http://www.w3.org/2004/02/skos/core#>
@prefix pubmed <http://purl.uniprot.org/pubmed/>

pubmed:4030726
	rdf:type Journal_Citation
	title 
		"Aspartate aminotransferase isozymes from rabbit liver. Purification and 
		 properties."
	author "Kuramitsu S."
	author "Inoue K."
	author "Kondo K."
	author "Aki K."
	author "Kagamiyama H."
	skos:exactMatch <http://purl.uniprot.org/medline/85289123>
	skos:exactMatch pubmed:4030726
	date 1985
	rdfs:comment 
		"Cytosolic and mitochondrial isozymes of aspartate aminotransferase 
		 (L-aspartate:2-oxoglutarate aminotransferase [EC 2.6.1.1] ) were 
		 purified to homogeneity from rabbit liver. The rabbit liver isozymes 
		 were closely similar to the corresponding isozymes from other sources, 
		 including human heart, pig heart, chicken heart, and rat liver, in their 
		 molecular weights, absorption spectra, amino acid compositions, 
		 isoelectric points, and Michaelis constants for the substrates. The 
		 NH2-terminal amino acid sequences of rabbit liver isozymes were 
		 identified up to 30 residues, and showed some differences from those of 
		 the corresponding isozymes obtained from other animals so far studied."
	name "J. Biochem."
	volume 97
	pages "1337-1345"

http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-page+EntryPage+-id+kXl1bEXNu+-e+[MEDLINE:4030726]+-vn+2+-ascii http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&id=11748933,11700088&retmode=xml

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