= Group activities =

[[PageOutline]]

 * TextMiningDayOne
 * TextMiningDayTwo
 * TextMiningDayThree
 * TextMiningDayFour

= Hacking, hacking, hacking =

== Implementation ==

  * Make Reflect generate RDFa. 
  * Query [TextMiningWebservices Whatizit, Reflect and Medie].
  * Get the RDFa data and use RDFa distiller or XSLT Transform to get RDF.
  * Get Pubmed data from !TogoWS
  * Get Uniprot RDF 
  * Deploy in Sesame
  * Make queries
  * Expose as linked data with Pubby

== Accessing existing services ==

Here is some code: http://scientifik.info/biohack/code/

== Building RDF (Uniprot style) ==

{{{

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#object'), 
 rdflib.URIRef('http://purl.uniprot.org/citations/4030726'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://purl.uniprot.org/core/scope'), 
 rdflib.Literal(u'PROTEIN SEQUENCE'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#Statement'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
 rdflib.URIRef('http://purl.uniprot.org/core/Citation_Statement'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://purl.uniprot.org/core/context'), 
 rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_2'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#subject'), 
 rdflib.URIRef('http://purl.uniprot.org/uniprot/P12345'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate'), 
 rdflib.URIRef('http://purl.uniprot.org/core/citation'))

(rdflib.URIRef('http://purl.uniprot.org/citations/4030726'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
 rdflib.URIRef('http://purl.uniprot.org/core/Journal_Citation'))

(rdflib.URIRef('http://purl.uniprot.org/citations/4030726'), 
 rdflib.URIRef('http://www.w3.org/2004/02/skos/core#exactMatch'), 
 rdflib.URIRef('http://purl.uniprot.org/pubmed/4030726'))

(rdflib.URIRef('http://purl.uniprot.org/citations/4030726'), 
 rdflib.URIRef('http://www.w3.org/2004/02/skos/core#exactMatch'), 
 rdflib.URIRef('http://purl.uniprot.org/medline/85289123'))

}}}

== Obtaining Subject, Verb, and Object of each sentence of MEDLINE titles/abstracts ==

 * Endpoint: [http://docman.dbcls.jp/medieconv]
  * argument: pmid (!PubMed ID, multiple IDs can be accepted using bar "|" as a delimiter)
  * Example: [http://docman.dbcls.jp/medieconv?pmid=17551671|18424370]

== Survey of MEDIE and Enju APIs ==

[http://hackathon3.dbcls.jp/wiki/TextMiningMedieAndEnju]