Changes between Version 13 and Version 14 of TextMiningDayTwo

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Timestamp:
2010/02/10 14:33:22 (9 years ago)
Author:
satagopam
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  • TextMiningDayTwo

    v13 v14  
    1111 
    1212Example URI of a linked data representation of a Stitch compound: [http://www4.wiwiss.fu-berlin.de/stitch/resource/chemicals/1] 
    13  
     13and a protein: [http://www4.wiwiss.fu-berlin.de/stitch/resource/proteins/100018] ... it seems having some problem.  
    1414 
    1515=== Available text mining webservices === 
     
    3030 * An example MEDIE result: [http://www-tsujii.is.s.u-tokyo.ac.jp/medie/search.cgi?search_type=semantic_search&verb=activate&object=p53&base_form=verb&ontology=verb] 
    3131 * results are also available as XML that we could transform, but we currently do not know how they identify PubMed abstracts in their REST URIs 
    32  
    33  
    34 === Naming entities === 
    35  
    36   * Use [http://bio2rdf.org Bio2RDF]: http://bio2rdf.org/page/pubmed:4030726 http://bio2rdf.org/page/uniprot:P12343 
    37     * You can have linked data 
    38   * Use [http://lsrn.org LSRN]: http://lsrn.org/UniProt:P08251 http://lsrn.org/PMID:16446403 
    39     * It references to the providers' entity page 
    40     * HTTP Response is RDF  
    41   * Use the providers' official URI 
    42     * not always available 
    43   * Create your own