Changes between Version 1 and Version 2 of Tools/EndUserClients

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Timestamp:
2010/01/21 03:26:02 (8 years ago)
Author:
kono
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  • Tools/EndUserClients

    v1 v2  
    11= End-User Clients = 
     2 
     3== !BioMart == 
     4 
     5== Cytoscape == 
     6 
     7=== Current Status === 
     8Cytoscape already has some tools related to semantic web technology: 
     9 * [http://www.bioinformatics.org/rdfscape/wiki/Main/HomePage RDFScape Plugin] - Plugin supports for reasoning on ontologies.  Also supports query/result visualization. 
     10 * BioPAX Reader - simply read and convert basic information stored in BioPAX level 2. 
     11And there are some issues: 
     12 * RDFScape is a bit hard to use for average users (biologists).  Need to refactor user interface. 
     13 * Typing SPARQL query is powerful for hardcore users, but too difficult for biologists. 
     14 * After Cytoscape reads BioPAX data, no semantics are used. 
     15 
     16=== Potential Projects for Hackathon === 
     17 * Re-design RDFScape UI 
     18  * User-friendly Query Builder 
     19  * Automatic data import - load selected set of ontologies automatically 
     20 * Internal data management - how should Cytoscape store semantics from BioPAX data files? 
     21 * Merge networks/attributes automatically using semantics  
     22 
     23== G-language == 
     24 
     25== Galaxy == 
     26 
     27== !InterMine == 
     28 
     29 
     30---- 
     31 
     32[wiki:Tools Back to Tools page]