[[PageOutline]] = Tools = Creating generic-yet-usable end user tools that work directly with the RDF graph data model. == Open Bio* == * Common API * User-side APIs * DB-side APIs (for triple store, Linked Data on the web) * Programs * Data format converters * Tools for import/export/search * Projects * BioRuby * !BioPython * !BioPerl * !BioJava * !BioLib == Text mining == * GO !PubMed * NER for genes, diseases, drugs * MEDIE * Query builder from natural language == End-user software == * Cytoscape * RDFScape Plugin * BioPAX Reader * !BioMart * !InterMine * Galaxy * G-language == Tutorial == * SparqlTutorial [wiki:Tools/EndUserClients Development plan and idea for end-user clients] == Basic Libraries == * [http://librdf.org/raptor/ Raptor RDF Parser Library] * [http://librdf.org/raptor/rapper.html rapper − Raptor RDF parsing and serializing utility] * [http://librdf.org/rasqal/ Rasqal RDF Query Library]