Changes between Version 12 and Version 13 of UseCases

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Timestamp:
2010/02/09 15:00:05 (8 years ago)
Author:
gordonp
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  • UseCases

    v12 v13  
    4545    * convert PDB relational to Sparql (kinjo-san, Francois) 
    4646    * miRbase (raoul) 
     47  * formulation of SPARQL queries -> RDFscape 
     48    * can be GUI. 
    4749  * Paul (biological hypothesis formulation) 
    4850    * predict PPI using homologs (PPI in yeast -> homolog in human) see [http://www.biomedcentral.com/1471-2164/9/426] 
     
    5052[[Image(http://www.biomedcentral.com/content/figures/1471-2164-9-426-1.jpg)]] 
    5153 
    52   * formulation of SPARQL queries -> RDFscape 
    53     * can be GUI. 
     54    * The query in Prolog would be something like: 
     55 
     56      probableInteractors(HumanGene1, HumanGene2) :- hasHomolog(HumanGene1, YeastGene1), hasInteractorFromDB(YeastGene1, YeastGene2), hasHomolog(YeastGene2, HumanGene2), hasHomolog(HumanGene2, OtherModelOrganismGene2), hasProteinDomain(HumanGene1, TargetDomain), hasProteinDomain(OtherModelOrganismGene1, TargetDomain), hasInteractorFromDB(OtherModelOrganismGene1, OtherModelOrganismGene2)). 
     57 
     58      probableInteractors(ing1, CandidateInteractor). 
     59 
     60      CandidateInteractor = p38MAPK ? ; 
     61      CandidateInteractor = MEKK4 ? ; 
     62 
     63    * Now we just need the predicates to exists in various SPARQL endpoints to give use the RDF Facts with predicates corresponding to hasHomolog, hasInteractorFromDB, and hasProteinDomain  Plus decide which way to express queries in SPARQL than span multiple services. :-) 
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