Changes between Version 21 and Version 22 of UseCases

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Timestamp:
2010/02/12 13:02:14 (9 years ago)
Author:
cmzmasek
Comment:

Taxonomy/Systematics added

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  • UseCases

    v21 v22  
    4949  * formulation of SPARQL queries -> RDFscape 
    5050    * can be GUI. 
     51  * Taxonomy/Systematics 
     52    * Biodiversity informatics 
     53    * Metagenomics (e.g. human gut microbiome) 
    5154  * Paul (biological hypothesis formulation) 
    5255    * predict PPI using homologs (PPI in yeast -> homolog in human) see [http://www.biomedcentral.com/1471-2164/9/426] 
    5356    * workflow overview: could use homolog, protein domain and protein-protein interaction resources (not all currently in one data warehouse so Sem Web could help).  In brackets are the values for a particular query, Inhibitor of Growth 1 (ING1). 
    5457[[Image(http://www.biomedcentral.com/content/figures/1471-2164-9-426-1.jpg)]] 
    55   * Taxonomy/Systematics 
    56     * Biodiversity informactics   
     58    
    5759 
    5860    * The query in Prolog would be something like (simplified so it's depending only on known protein domains, whereas in the publication we built our own domain models):