Changes between Version 4 and Version 5 of VisualizationAndInteraction

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Timestamp:
2010/02/12 17:19:34 (9 years ago)
Author:
baranda
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  • VisualizationAndInteraction

    v4 v5  
    3131== Molecular Interactions == 
    3232 
    33 We have been working in trying to make [http://psicquic.googlecode.com PSICQUIC] output RDF/XML. PSICQUIC is a standard that defines a common way to access Molecular Interaction resources (!IntAct, MINT, !BioGrid, iRefIndex, MatrixDB, Reactome x2, MPIDB, ChEMBL), reaching more than 1.7 milion interactions.  
    34  
    35  * PSICQUIC: http://psicquic.googlecode.com 
    36  * PSICQUIC registry: http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=STATUS 
     33We have been working in trying to make [http://psicquic.googlecode.com PSICQUIC] output RDF/XML. PSICQUIC is a standard that defines a common way to access Molecular Interaction resources (!IntAct, MINT, !BioGrid, iRefIndex, MatrixDB, Reactome x2, MPIDB, ChEMBL), reaching [http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=STATUS more than 1.7 milion] interactions.  
    3734 
    3835The approach taken has been to try to make PSICQUIC services return BioPAX Level 3 data. As the underlying data is PSI-MI XML, a converter has been created using JENA. 
     
    4744 * Add all the data available in PSI-MI XML to the output. 
    4845 
    49 A test to import the output data into Cytoscape 2.7.0 beta 3 has been successfully done. 
     46A test to import the output data into Cytoscape 2.7.0 beta 3 has been successfully done. [http://hackathon3.dbcls.jp/attachment/wiki/VisualizationAndInteraction/psicquicBiopaxCytoscape.JPG [Image]] 
    5047 
    5148=== Note about other PSI formats ===