Changes between Version 17 and Version 18 of WikiStart

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2009/11/19 19:25:35 (8 years ago)
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  • WikiStart

    v17 v18  
    1 [[PageOutline]] 
    2  
    3 = DBCLS Biohackathon 2010 = 
    4  
    5 The 3rd DBCLS !BioHackathon for interpreting biological knowledge with Semantic Web technologies will be held during 2010/2/8-12 in Japan. 
    6  
    7  * [wiki:Participants] 
    8  * [wiki:Schedule] 
    9  * [wiki:Symposium] 
    10  * [wiki:Hackathon] 
    11  * [wiki:MeetingReport] 
    12  
    13 == About the Hackathon == 
    14  
    15 The hackathon (hacking + marathon) basically is a camp where invited participants discuss about current issues and implement software to solve the problems on site collaboratively. This kind of meeting is very effective for the intensive development of projects, because face-to-face meeting of developers, who are usually spread around the world, accelerates communication and collaboration to exchange their ideas. 
    16  
    17 !BioHackathon 2010 is sponsored by the Database Center for Life Science ([http://dbcls.rois.ac.jp/en/ DBCLS]), and will be held in Tokyo, Japan. 
    18  
    19  * DBCLS Biohackathon 2010      http://hackathon3.dbcls.jp/ 
    20  * DBCLS Biohackathon 2009      http://hackathon2.dbcls.jp/ 
    21  * DBCLS Biohackathon 2008      http://hackathon.dbcls.jp/ 
    22  * DBCLS        http://dbcls.rois.ac.jp/en/ 
    23  
    24 The DBCLS is being accepted as a national center for the sustainable life science databases in Japan.  
    25  
    26 == Objectives == 
    27  
    28  * To realize semantic search framework 
    29  * To establish High-performance storage system for semantic data 
    30  * To federate Linked Data 
    31  * To use, reuse, mashup and mix the biological data on Semantic Web 
    32  
    33 == Pre-hackathon discussions == 
    34  
    35  * [wiki:Queries] 
    36    * Example queries to be resolved by Semantic Web technologies 
    37  * [wiki:Datasets] 
    38    * Bio2RDF 
    39    * Linked Data 
    40    * What kind of data are currently missing (as RDF) to resolve the above queries? 
    41  * [wiki:Tools] 
    42    * Open Bio* -- "creating generic-yet-usable end user tools that work directly with the RDF graph data model" 
    43  * [wiki:Stores] 
    44    * [http://virtuoso.openlinksw.com Virtuoso] 
    45    * [http://www.openrdf.org/ Sesame] [http://jena.sourceforge.net/ Jena] [http://librdf.org Redland] [http://mulgara.org Mulgara] [http://sourceforge.net/projects/bigdata/ bigdata] 
    46    * RDB, Key-value store?  
    47  * [wiki:Interfaces] 
    48    * SPARQL 
    49    * !InterMine 
    50    * Galaxy 
    51    * !BioMart 
    52    * Cysoscape 
    53  
    54  * how to re-organize existing databases 
    55  * how to semantically annotate data (id, link, ontology) 
    56  * how to store and search triples 
    57  * how to utilize triples in open bio* 
    58  * how to query biological questions and get results 
    59  * how to scale for large amount of data 
    60  * how to utilize via web services 
    61  * how to visualize (what kind of user interface is required) 
    62  
    63 == Mailing list == 
    64  
    65  * http://kml.dbcls.jp/pipermail/biohack3/ 
    66  * biohack3_at_kml.dbcls.jp 
    67  
    68 == Venue == 
    69  
    70  * Tokyo (DBCLS) - for the 1st day (reception and symposium) and the rest 
    71   
    72 === Access === 
    73  
    74  * [http://dbcls.rois.ac.jp/en/access/index.html DBCLS] (Tokyo venue) 
    75   
    76 Annotated Google Maps and KML file for Google Earth are available: 
    77  
    78  * [http://tinyurl.com/ch7ytg Google Maps for the BioHackathon 2009] 
    79  * [http://hackathon2.dbcls.jp/attachment/wiki/WikiStart/biohackathon2009-locations.kmz KML file for Google Earth] 
    80  
    81 === Housing === 
    82  
    83   
    84 == Misc == 
    85  
    86 What should you bring with you? 
    87   
    88  * Laptop computer 
    89  * Conversion plug for your AC adaptor (identical to the US type; 100 volt) 
    90  * Local liquor as always (for the Liquorthon at night or for the reception :-) 
    91  * [http://www.linkedin.com/ LinkedIn] account to share your contact address 
    92  
    93 === SVN repository === 
    94  
    95  * http://hackathon3.dbcls.jp/svn/ 
    96  
    97 === Streaming and social networking === 
    98  
    99  * http://www.ustream.tv/channel/biohackathon2010 
    100  * IRC: #biohackathon2010 on chat1.ustream.tv:6667 
    101  
    102  * http://friendfeed.com/rooms/biohackathon-2010 -- !FriendFeed room for !BioHackathon 2010 
    103  * #biohackathon2010 -- official hash tag for [http://search.twitter.com/search?q=%23biohackathon2010&lang=all twitter], citeulike and so on. 
    104  * [http://www.linkedin.com/groups?gid=1864599 LinkedIn Group] 
    105  
    106 === Photo album === 
    107  
     1Insawsoccalia 
     2<a href="http://avsKedvvvssk.com">Bdog</a>