Changes between Version 18 and Version 19 of WikiStart

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2009/11/20 14:51:06 (8 years ago)
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  • WikiStart

    v18 v19  
    1 Insawsoccalia 
    2 <a href="http://avsKedvvvssk.com">Bdog</a> 
     1[[PageOutline]]  
     2 
     3= DBCLS Biohackathon 2010 =  
     4 
     5The 3rd DBCLS !BioHackathon for interpreting biological knowledge with Semantic Web technologies will be held during 2010/2/ 8-12 in Japan.  
     6 
     7 * [wiki:Participants]  
     8 * [wiki:Schedule]  
     9 * [wiki:Symposium]  
     10 * [wiki:Hackathon]  
     11 * [wiki:MeetingReport]  
     12 
     13== About the Hackathon ==  
     14 
     15The hackathon (hacking + marathon) basically is a camp where invited participants discuss about current issues and implement software to solve the problems on site collaboratively. This kind of meeting is very effective for the intensive development of projects, because face-to-face meeting of developers, who are usually spread around the world, accelerates communication and collaboration to exchange their ideas.  
     16  
     17!BioHackathon 2010 is sponsored by the Database Center for Life Science ([http://dbcls.rois.ac.jp/en/ DBCLS]), and will be held in Tokyo, Japan.  
     18  
     19 * DBCLS Biohackathon 2010      http://hackathon3.dbcls.jp/  
     20 * DBCLS Biohackathon 2009      http://hackathon2.dbcls.jp/  
     21 * DBCLS Biohackathon 2008      http://hackathon.dbcls.jp/  
     22 * DBCLS        http://dbcls.rois.ac.jp/en/  
     23  
     24The DBCLS is being accepted as a national center for the sustainable life science databases in Japan.   
     25  
     26== Objectives ==  
     27  
     28 * To realize semantic search framework  
     29 * To establish High-performance storage system for semantic data  
     30 * To federate Linked Data  
     31 * To use, reuse, mashup and mix the biological data on Semantic Web  
     32  
     33== Pre-hackathon discussions ==  
     34  
     35 * [wiki:Queries]  
     36   * Example queries to be resolved by Semantic Web technologies  
     37 * [wiki:Datasets]  
     38   * Bio2RDF  
     39   * Linked Data  
     40   * What kind of data are currently missing (as RDF) to resolve the above queries?  
     41 * [wiki:Tools]  
     42   * Open Bio* -- "creating generic-yet-usable end user tools that work directly with the RDF graph data model"  
     43 * [wiki:Stores]  
     44   * [http://virtuoso.openlinksw.com Virtuoso]  
     45   * [http://www.openrdf.org/ Sesame] [http://jena.sourceforge.net/ Jena] [http://librdf.org Redland] [http://mulgara.org Mulgara] [http://sourceforge.net/projects/bigdata/ bigdata]  
     46   * RDB, Key-value store?   
     47 * [wiki:Interfaces]  
     48   * SPARQL  
     49   * !InterMine  
     50   * Galaxy  
     51   * !BioMart  
     52   * Cysoscape  
     53  
     54 * how to re-organize existing databases  
     55 * how to semantically annotate data (id, link, ontology)  
     56 * how to store and search triples  
     57 * how to utilize triples in open bio*  
     58 * how to query biological questions and get results  
     59 * how to scale for large amount of data  
     60 * how to utilize via web services  
     61 * how to visualize (what kind of user interface is required)  
     62 
     63== Mailing list ==  
     64 
     65 * http://kml.dbcls.jp/pipermail/biohack3/  
     66 * biohack3_at_kml.dbcls.jp  
     67 
     68== Venue ==  
     69 
     70 * Tokyo (DBCLS) - for the 1st day (reception and symposium) and the rest  
     71 
     72=== Access ===  
     73 
     74 * [http://dbcls.rois.ac.jp/en/access/index.html DBCLS] (Tokyo venue)  
     75 
     76Annotated Google Maps and KML file for Google Earth are available:  
     77 
     78 * [http://tinyurl.com/ch7ytg Google Maps for the BioHackathon 2009]  
     79 * [http://hackathon2.dbcls.jp/attachment/wiki/WikiStart/biohackathon2009-locations.kmz KML file for Google Earth]  
     80 
     81=== Housing ===  
     82 
     83 
     84== Misc ==  
     85 
     86What should you bring with you?  
     87 
     88 * Laptop computer  
     89 * Conversion plug for your AC adaptor (identical to the US type; 100 volt)  
     90 * Local liquor as always (for the Liquorthon at night or for the reception :-)  
     91 * [http://www.linkedin.com/ LinkedIn] account to share your contact address  
     92 
     93=== SVN repository ===  
     94 
     95 * http://hackathon3.dbcls.jp/svn/  
     96 
     97=== Streaming and social networking ===  
     98 
     99 * http://www.ustream.tv/channel/biohackathon2010  
     100 * IRC: #biohackathon2010 on chat1.ustream.tv:6667  
     101 
     102 * http://friendfeed.com/rooms/biohackathon-2010 -- !FriendFeed room for !BioHackathon 2010  
     103 * #biohackathon2010 -- official hash tag for [http://search.twitter.com/search?q=%23biohackathon2010&lang=all twitter], citeulike and so on.  
     104 * [http://www.linkedin.com/groups?gid=1864599 LinkedIn Group]  
     105 
     106=== Photo album ===