Changes between Version 2 and Version 3 of 2010Q4Rutger

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Timestamp:
2011/01/31 15:40:17 (14 years ago)
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RutgerVos
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  • 2010Q4Rutger

    v2 v3  
    22== NeXML I/O as a BioRuby plugin == 
    33During the 2010 Google Summer of Code, student Anurag Priyam developed some classes for reading and writing NeXML (http://www.nexml.org). However, these classes were built as part of the "core" BioRuby architecture. Best practices dictate that new code is instead released as a biogem plugin. To this end, I am refactoring Anurag's code. Steps taken so far: 
    4  * Tools needed for biogem development and deployment: 
     4 * Tools needed for biogem development and deployment (http://bioruby.open-bio.org/wiki/BiogemInstallation) 
    55  * Update RubyGems, i.e. `sudo gem update --system` 
    66  * Install bio-gem, i.e. `sudo gem install bio-gem` 
    … …  
    1313  * `git branch bioruby-nexml` 
    1414  * `git checkout bioruby-nexml` 
    15  * Make biogem compliant folder layout 
     15 * Make biogem compliant folder layout (http://bioruby.open-bio.org/wiki/BiogemDevelopment) 
    1616  * `biogem nexml` 
    1717  * Merge bioruby-nexml classes, unit tests and test files in biogem folder structure