DBCLS BioHackathon 2010
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  1. DBCLS RDFs
    1. Target datasets
    2. TogoWS REST API + RDF output powered by BioRuby
    3. MEDLINE/PubMed
    4. Kazusa Gene Indexing + PubMed + cyanobase + rhizobase
    5. Allie - A Search Service for Abbreviation / Long Form

DBCLS RDFs

Target datasets

  • TogoWS REST API
  • MEDLINE/PubMed (full)
  • Kazusa Gene Indexing ( http://a.kazusa.or.jp)
  • Allie  http://allie.dbcls.jp
  • Databases archived at DBCLS  http://dbarchive.lifesciencedb.jp/
  • Dictionaries and glossaries (digitalized) at  http://lifesciencedb.jp/lsdb.cgi?gg=dic

TogoWS REST API + RDF output powered by BioRuby

Retrieve entry in RDF/Turtle.

  •  http://togows.dbcls.jp/entry/ncbi-pubmed/10975656.ttl

Search entries in RDF/Turtle.

  •  http://togows.dbcls.jp/search/ncbi-pubmed/blain+cancer.ttl

MEDLINE/PubMed

RDF/TogoWS/PubMed

Kazusa Gene Indexing + PubMed + cyanobase + rhizobase

RDF/KazusaAnnotation

  • SPARQL test query  http://virtuoso.beta.dbcls.jp/sparql/
  • Faceted view:  http://virtuoso.beta.dbcls.jp/4store/ka/fct/
  •  http://a.kazusa.or.jp
  •  http://genome.kazusa.or.jp/cyanobase
  •  http://genome.kazusa.or.jp/rhizobase

Allie - A Search Service for Abbreviation / Long Form

RDF/Allie

  • SPARQL test query page:  http://data.allie.dbcls.jp/sparql/
  • Faceted view:  http://data.allie.dbcls.jp/fct/
  •  http://allie.dbcls.jp

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