= URL =
 * PDBj http://www.pdbj.org/PDBID (PDBID = 1gof, 1a00, ...) This is a fake URL.
 * KEGG http://togows.dbcls.jp/entry/kegg-DBNAME/ENTRYID
 * DDBJ http://togows.dbcls.jp/entry/ddbj/ENTRYID
 * !UniProt http://www.uniprot.org/uniprot/ENTRYID
 * !PubMed http://www.ncbi.nlm.nih.gov/pubmed/ENTRYID
 * Taxonomy http://www.ncbi.nlm.nih.gov/Taxonomy/TAXID (this is invalid URL)
 * HapMap http://www.khapmap.org/ENTRYID (this is invalid URL)

= PDB things =
 * ftp://ftp.protein.osaka-u.ac.jp/pub/pdb/data/structures/all/XML-noatom/{PDBID}-noatom.xml.gz
 * /PDBx:datablock/PDBx:entity_src_genCategory/PDBx:entity_src_gen/PDBx:pdbx_gene_src_ncbi_taxonomy_id
where {PDBID} should be something like "1a00" (in lowercase).

= DDBJ things =
 * http://xml.nig.ac.jp/rest/Invoke?service=DDBJ&method=getXMLEntry&accession=<ACCESSION>
    e.g. http://xml.nig.ac.jp/rest/Invoke?service=DDBJ&method=getXMLEntry&accession=AL121903
 * URI which returns prototype RDF
 * http://sabi.ddbj.nig.ac.jp/ddbj/data/<ACCESSION>
    e.g. http://sabi.ddbj.nig.ac.jp/ddbj/data/Z48241
 * URI which returns in flatfile format
 * http://sabi.ddbj.nig.ac.jp/ddbj/<ACCESSION>
    e.g. http://sabi.ddbj.nig.ac.jp/ddbj/Z48241
 * URI which redirects HTML page
 * http://sabi.ddbj.nig.ac.jp/ddbj/html/<ACCESSION>
    e.g. http://sabi.ddbj.nig.ac.jp/ddbj/html/Z48241

= KEGG things =
 * Draft KEGG RDF download site (temporal) : http://www.hgc.jp/~shuichi/biohack2010/

 * Note: I wouldn't recommend to display the following files in your web browsers because it's large text file.
 * http://www.hgc.jp/~shuichi/biohack2010/kegg-genes2pdb.ttl (KEGG GENES2PDB / PDB2KEGG GENES turtle)
 * http://www.hgc.jp/~shuichi/biohack2010/kegg-genes2kegg-ko.ttl (KEGG GENES2KO / KEGG KO2GENES turtle)
 * http://www.hgc.jp/~shuichi/biohack2010/kegg-ko2kegg-pathway.ttl (KEGG KO2PATHWAY / KEGG PATHWAY2KO turtle)

= Reflect for pubmed =
To use reflect on pubmed:
http://reflect.cbs.dtu.dk/TEST/GetEntities?uri=http://www.ncbi.nlm.nih.gov/pubmed/20146332&entity_types=9606

The result will contain XML code like seen at
[http://reflect.cbs.dtu.dk/restAPI.html http://reflect.cbs.dtu.dk/restAPI.html]


＝ SPARQL endpoint =

Room 415 network
 * Bio2RDF KEGG - http://192.168.11.61:8890/sparql/
 * Bio2RDF PDB - http://192.168.11.61:8891/sparql/
 * PDBj - 
 * KEGG - 
 * DDBJ - 

Facet
 * Bio2RDF KEGG - http://192.168.11.61:8890/fct/
 * Bio2RDF PDB - http://192.168.11.61:8891/fct/
 * PDBj - 
 * KEGG - 
 * DDBJ -