| | 1 | After a 1:30 hour brain storming discussion, the group take a break and get ready for the Data Provider session. |
| | 2 | |
| | 3 | The representative from the following official data provider were presents : |
| | 4 | |
| | 5 | * DBCLS |
| | 6 | * HAPMAP/Corean |
| | 7 | * KEGG |
| | 8 | * PDBj |
| | 9 | * UniProt |
| | 10 | |
| | 11 | The representative from the following data integration project offering a SPARQL endpoint: |
| | 12 | |
| | 13 | * http://bio2rdf.org/ [SPARQL http://delicious.com/fbelleau/bio2rdf:sparql] |
| | 14 | * http://www.semantic-systems-biology.org/ [SPARQL http://www.semantic-systems-biology.org/biogateway/endpoint] |
| | 15 | * http://hcls.deri.ie/ [SPARQL http://hcls.deri.ie/sparql] |
| | 16 | |
| | 17 | These are the objectives that were discussed : |
| | 18 | |
| | 19 | * RAW DATA available as N-TRIPLES dump should be produced by the data provider and made available from their FTP or HTTP server |
| | 20 | * SPARQL endpoint for each dataset should be made available |
| | 21 | * Standard URIs should be used in triple |
| | 22 | * Standard predicate should be used in triple |
| | 23 | |
| | 24 | ==RAW Data dump== |
| | 25 | |
| | 26 | UniProt already offer raw data in RDF from his own FTP server. ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/rdf/ |
| | 27 | DDBJ, PDBJ and KEEG will do the same. |
| | 28 | |
| | 29 | ==SPARQL endpoint== |
| | 30 | |
| | 31 | There is already a certain number of SPARQL endpoints available but none are owned by the official data provider. |
| | 32 | |
| | 33 | There is a need for an hosting service offering SPARQL endpoint in which it will be possible to load the official raw data provided by the data provider. |
| | 34 | |
| | 35 | == Standard URIs == |
| | 36 | |
| | 37 | == Standard predicates == |
| | 38 | |
