Datasets

Lists currently available and still missing datasets (as Linked Data / RDF).

Available resources

We should categorize followings according to their format (e.g. RDF) and relationships.

• Bio2RDF
  • Ensembl - genes
  • OBO - GO terms, ChEBI compounds
  • NCBI - genes, sequences, mesh terms, disease (omim), pubmed articles
  • KEGG - pathways, genes, enzymes, compounds, drugs, glycans, reactions
  • MGI - genes
  • PDB - structures
  • UniProt - proteins, keywords, taxonomy
• Linked Data

Missing resources

• Taxonomy <-> Pathway module