GFF3 is a tab-delimited, ontology-aware format of genomic features. It should be beneficial to represent such genomic features in RDF so that we can exchange data and make queries with SW technologies.

Participants

• Erick Antezana
• Alberto Labarga
• Yu Lin
• Hideya KAWAJI
• Venkata Satagopam
• Jerven Bolleman
• ...

Scope

Mapping (proposal)

Column 1: "seqid"

Column 2: "source"

Column 3: "type"

Column 4: "start"

Column 5: "end"

Column 6: "score"

Column 7: "strand"

Column 8: "phase"

Column 9: "attributes"

Tools

•  GFF to OWL (Source code not available yet?)

Discussion

• application to general genomic features (BED, etc)?
• Genomic coordinate system (0-based / 1-based)
• Dasty?

Milestones