Version 13 (modified by erick.antezana, 14 years ago)

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 GFF3 is a tab-delimited, ontology-aware format of genomic features. It should be beneficial to represent such genomic features in RDF so that we can exchange data and make queries with SW technologies.

Participants

  • Erick Antezana
  • Alberto Labarga
  • Yu Lin
  • Hideya KAWAJI
  • Venkata Satagopam
  • Jerven Bolleman
  • ...

Scope

Mapping (proposal)

Column 1: "seqid"

Column 2: "source"

Column 3: "type"

Column 4: "start"

Column 5: "end"

Column 6: "score"

Column 7: "strand"

Column 8: "phase"

Column 9: "attributes"

Tools

Discussion

  • application to general genomic features (BED, etc)?
  • Genomic coordinate system (0-based / 1-based)
  • Dasty?

Milestones