| Version 14 (modified by erick.antezana, 14 years ago) |
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GFF3 is a tab-delimited, ontology-aware format of genomic features. It should be beneficial to represent such genomic features in RDF so that we can exchange data and make queries with SW technologies.
Participants
- Erick Antezana
- Alberto Labarga
- Yu Lin
- Hideya KAWAJI
- Venkata Satagopam
- Jerven Bolleman
- ...
Scope
Mapping (proposal)
| GFF Element | RDF | Example |
| Column 1: "seqid" | ? | ? |
| Column 2: "source" | ? | ? |
| Column 3: "type" | ? | ? |
| Column 4: "start" | ? | ? |
| Column 5: "end" | ? | ? |
| Column 6: "score" | ? | ? |
| Column 7: "strand" | ? | ? |
| Column 8: "phase" | ? | ? |
| Column 9: "attributes" | ? | ? |
Tools
- GFF to OWL (Source code not available yet?)
Discussion
- application to general genomic features (BED, etc)?
- Genomic coordinate system (0-based / 1-based)
- Dasty?
Milestones
