| 5 | | == Tools to manipulate RDF data == |
| | 5 | (Please add your name!) |
| | 6 | |
| | 7 | * Toshiaki Katayama |
| | 8 | |
| | 9 | === RDF libraries in each language === |
| | 10 | |
| | 11 | (Please add other languages as well!) |
| | 12 | |
| | 13 | Name of the available libraries |
| | 14 | |
| | 15 | * Ruby |
| | 16 | * ActiveRDF: may depends on Rails |
| | 17 | * Python |
| | 18 | * librdf |
| | 19 | * Perl |
| | 20 | * RDF: generic RDF library |
| | 21 | * ONTO-Perl: OBO centric |
| | 22 | |
| | 23 | Functionality |
| | 24 | |
| | 25 | * RDF reader (in) |
| | 26 | * RDF generator (out) |
| | 27 | |
| | 28 | || language || in || out|| |
| | 29 | || Ruby || ? || ? || |
| | 30 | || Python || o || ? || |
| | 31 | || Perl || o || ? || |
| | 32 | |
| | 33 | === Tools to manipulate RDF data === |
| | 34 | |
| | 35 | * RDF grep |
| | 36 | * RDF diff |
| | 37 | * RDF sort |
| | 38 | * RDF uniq |
| | 39 | * RDF wc (triple count) |
| | 40 | * RDF cat (combine) |
| | 41 | |
| | 42 | ** (most of) these commands will output RDF graph :) |
| | 43 | ** "sort" before "diff" is better. |
| | 44 | ** it would be great if "diff" can have an option to ignore "empty node" which can shift internal IDs even if the graphs are almost same. |
| | 45 | |
| | 46 | === RDF converters === |
| | 47 | |
| | 48 | * general: |
| | 49 | * RDF --> JSON (for CoarchDB, mongoDB etc.) |
| | 50 | * biological: |
| | 51 | * Bio DB entries -> RDF (in BioRuby for TogoWS, for example) |
| | 52 | * OBO <-> RDF (used in Cell Cycle Ontology because ".obo" file format is easy to read for human) |
| | 53 | |
| | 54 | === Interface for SPARQL endpoint === |
| | 55 | |
| | 56 | Language availability |
| | 57 | |
| | 58 | || Ruby || ? || |
| | 59 | || Python || o || |
| | 60 | || Perl || ? || |
| | 61 | || Java || o || |
| | 62 | || R || ? || |
