Changes between Version 14 and Version 15 of SystemsBiologySBML

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Timestamp:
2010/02/12 19:48:06 (15 years ago)
Author:
ogishima
Comment:

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  • SystemsBiologySBML

    v14 v15  
    103103SPARQL end point is now under construction, and will appear soon. :-) 
    104104 
    105 = Problems & ToDo = 
    106  * BioPAX OWL might be too complicate to archive the above usecase (goal). SPARQL search might took so much time to return results. Appropriate reduction of information of SBML model is required to convert from SBML to RDF (not OWL). 
    107  * In the case of conversion from SBML to RDF, mapping of name among models is required.  
    108  
    109105= Visualization =  
    110106 * RelFinder in Virtuoso 
    111107 * Cytoscape: [http://chianti.ucsd.edu/Cyto-2_7-beta/ Cytoscape 2.7.0 beta] supports BioPAX Level 3 by Ono-san.  See [wiki:VisualizationAndInteraction]. 
    112108 * BioCichlid: [http://newton.tmd.ac.jp/ BioCichlid] will support BioPAX Level 2 (now under implementing). 
     109 
     110= Problems & ToDo = 
     111 * BioPAX OWL might be too complicate to archive the above usecase (goal). SPARQL search might took so much time to return results. Appropriate reduction of information of SBML model is required to convert from SBML to RDF (not OWL). 
     112 * In the case of conversion from SBML to RDF, mapping of name among models is required.  
    113113 
    114114= Members =