= Text Mining Task Force =


== Members ==

 * [http://www.linkedin.com/in/albertolabarga Alberto Labarga]
 * [http://uk.linkedin.com/pub/hammad-afzal/2/49/298 Hammad Afzal]
 * [http://www.linkedin.com/in/matthiassamwald/en Matthias Samwald]
 * [http://de.linkedin.com/pub/venkata-satagopam/18/7a6/8b7 Venkata Satagopam] 
 * [http://www.linkedin.com/in/heikohorn Heiko Horn]
 * [http://www.linkedin.com/pub/10/71/3a5 Hong-Woo Chun]
 * Takagai-san
 * Ohuchida-san


== Proposal ==


  * Integration of text mining results
    * [http://reflect.ws Reflect] / [http://www.ebi.ac.uk/webservices/whatizit Whatizit] / [http://www-tsujii.is.s.u-tokyo.ac.jp/projects.html DBCLS NER]
    * Results as triplets [http://whatizit.neurocommons.org/ Check Science Commons text annotation service]  
      * URI and predicates
    * Implementation with [http://sadiframework.org SADI]
    * Result presentation using [http://hcls.deri.org/atag/generator/ <a>Tag]
  * Explore relations
  * Interfaces

== Ideas ==

==== Reflect RDFa snippets ====

Idea 1 (interlaced with the text):
{{{
<div xmlns:sioc="http://rdfs.org/sioc/ns#" typeof="sioc:Item">
<span class='reflect_protein'><a rel="sioc:topic" resource="http://purl.uniprot.org/uniprot/P05113"></a>IL-5</span>
</div>
}}}

Idea 2 (at the end of the document, non-redundant):
{{{
<div xmlns:sioc="http://rdfs.org/sioc/ns#" typeof="sioc:Item">
<span id='reflectEntity0'>9606.ENSP00000231454</span>
<a rel="sioc:topic" resource="http://purl.uniprot.org/uniprot/P05113"></a>
</div>
}}}

==== Whatizit RDFa service ====

IL-5 Example:
http://whatizit.neurocommons.org/index.py/text_query?pipeline=whatizitEBIMedDiseaseChemicals&query=IL-5&format=atag&max_results=10

Converted to Turtle:
http://www.w3.org/2007/08/pyRdfa/extract?uri=http://whatizit.neurocommons.org/index.py/text_query?pipeline=whatizitEBIMedDiseaseChemicals&query=IL-5&format=atag&max_results=10

This uses a W3 service (http://www.w3.org/2007/08/pyRdfa/extract)