Changes between Version 3 and Version 4 of TextMiningDayFour

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Timestamp:
2010/02/12 11:32:18 (15 years ago)
Author:
matthiassamwald
Comment:

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  • TextMiningDayFour

    v3 v4  
    2323Note: If given the choice, prefer Swissprot over TrEMBL 
    2424 
    25 {{{ 
    26 <entity_name id="disease6" facta_id="UMLS:C0878544" type="disease">cardiomyopathy</entity_name> 
    27 }}} 
     25{{{ <entity_name id="disease6" facta_id="UMLS:C0878544" type="disease">cardiomyopathy</entity_name> }}} 
    2826 
    2927---> Unfortunately we still don't have well accepted URIs for UMLS yet. We could do a lookup and provide URIs pointing to the OBO disease ontology, but this is a bit computationally expensive. 
    3028 
    31 {{{ 
    32 <entity_name id="compound18615" facta_id="CAS:79-43-6" type="compound">Dichloroacetate</entity_name> 
     29{{{ <entity_name id="compound18615" facta_id="CAS:79-43-6" type="compound">Dichloroacetate</entity_name> 
    3330<entity_name id="enzyme1375" facta_id="EC:3.5.3.22" type="enzyme"> 
    3431<entity_name id="compound18620" facta_id="CAS:61-78-9" type="compound">PAH</entity_name> 
    35 </entity_name> 
    36 }}} 
     32</entity_name> }}} 
    3733 
    3834---> CAS and EC numbers would  need to be mapped as well