= Group activities: Day Four = * TextMiningDayOne * TextMiningDayTwo * TextMiningDayThree * TextMiningDayFour == The part of the MEDIE result XML that we should focus on == {{{
19694806 ... Treatment with 5-aza-2'-deoxycytidine and/or the histone deacetylase inhibitor trichostatin A increased Dag1 mRNA expression levels in myoblasts, and methylation decreased promoter activity in vitro. }}} == How to generate RDF-friendly URIs for recognized entities == {{{ http://purl.uniprot.org/uniprot/Q62165 Note: If given the choice, prefer Swissprot over TrEMBL {{{ cardiomyopathy }}} ---> Unfortunately we still don't have well accepted URIs for UMLS yet. We could do a lookup and provide URIs pointing to the OBO disease ontology, but this is a bit computationally expensive. {{{ Dichloroacetate PAH }}} ---> CAS and EC numbers would need to be mapped as well Using TogoDB, although not a primary database provider, you can use URI for UMLS (subset, those can be redistributed).[[BR]] Note that currently we (DBCLS) haven't loaded the UMLS data to togoDB yet, so you will see an error page if you access to the following URL. But, we will prepare soon. {{{ http://togows.dbcls.jp/entry/togodb-umls/C08384423 }}} == RDF format discussion == {{{ _:hasG1 _:hasG1 "p53" _:hasG1 _:hasG1 ... <*:hasSentences> _:hasS1 <*:hasSentences> _:hasS2 <*:hasSentences> _:hasS3 ... _:hasS1 <*:hasSubject> _:sbj1 _:hasS1 <*:hasVerb> _:verb1 _:hasS1 <*:hasObject> _:obj1 _:sbj1 "peripheral lymphocytes" _:verb1 "secreting" _:obj1 "a specific cytokine" "pmid:22333111" }}} ---- TextMining