[[PageOutline]]
= Group activities: Day One =
* [TextMining Open space discussion]
* TextMiningDayOne
* TextMiningDayTwo
* TextMiningDayThree
* TextMiningDayFour
* TextMiningReport
==== Reflect RDFa snippets ====
Idea 1 (interlaced with the text):
{{{
}}}
Idea 2 (at the end of the document, non-redundant):
{{{
}}}
==== Whatizit RDFa service ====
IL-5 Example:
http://whatizit.neurocommons.org/index.py/text_query?pipeline=whatizitEBIMedDiseaseChemicals&query=IL-5&format=atag&max_results=10
Converted to Turtle: WhatizitAsTurtle
This uses a W3 service (http://www.w3.org/2007/08/pyRdfa)
==== Uniprot RDF ====
http://www.uniprot.org/uniprot/P12345.n4
{{{
uniprot:P12345
rdf:type Protein
alternativeName
rdf:type Structured_Name
fullName "Transaminase A"
citation
rdf:type Journal_Citation
title
"Aspartate aminotransferase isozymes from rabbit liver. Purification
and properties."
author "Kuramitsu S."
author "Inoue K."
author "Kondo K."
author "Aki K."
author "Kagamiyama H."
skos:exactMatch
skos:exactMatch
date 1985
name "J. Biochem."
volume 97
pages "1337-1345"
+rdf:type Citation_Statement
+scope "PROTEIN SEQUENCE"
+context
rdf:type Tissue
rdfs:label "Liver"
}}}
==== Pubmed RDF @ TogoWS ====
http://togows.dbcls.jp/entry/pubmed/4030726.ttl
{{{
"4030726" .
"pmid:4030726" .
"pmid:4030726" .
.
"NLM" .
"MEDLINE" .
"1985-10-09" .
"1985-10-09" .
"2007-12-19" .
"97" .
"97" .
"1985 May" .
"1985-05" .
"Aspartate aminotransferase isozymes from rabbit liver. Purification and properties." .
"Aspartate aminotransferase isozymes from rabbit liver. Purification and properties." .
"1337-45" .
"1337" .
"Cytosolic and mitochondrial isozymes of aspartate aminotransferase (L-aspartate:2-oxoglutarate aminotransferase [EC 2.6.1.1] ) were purified to homogeneity from rabbit liver. The rabbit liver isozymes were closely similar to the corresponding isozymes from other sources, including human heart, pig heart, chicken heart, and rat liver, in their molecular weights, absorption spectra, amino acid compositions, isoelectric points, and Michaelis constants for the substrates. The NH2-terminal amino acid sequences of rabbit liver isozymes were identified up to 30 residues, and showed some differences from those of the corresponding isozymes obtained from other animals so far studied." .
"" .
"Kuramitsu, S" .
"Kuramitsu, S" .
"Inoue, K" .
"Inoue, K" .
"Kondo, K" .
"Kondo, K" .
"Aki, K" .
"Aki, K" .
"Kagamiyama, H" .
"Kagamiyama, H" .
"Kuramitsu S" .
"Inoue K" .
"Kondo K" .
"Aki K" .
"Kagamiyama H" .
"Journal Article Research Support, Non-U.S. Gov't" .
"JAPAN" .
"J Biochem" .
"J Biochem" .
"Journal of biochemistry" .
"0376600" .
"0 (Isoenzymes)" .
"IM" .
"Amino Acid Sequence" .
"Amino Acids/analysis" .
"Animals" .
"Aspartate Aminotransferases/*isolation & purification/metabolism" .
"Isoelectric Point" .
"Isoenzymes/*isolation & purification/metabolism" .
"Kinetics" .
"Liver/*enzymology" .
"Molecular Weight" .
"Rabbits" .
"Spectrum Analysis" .
"1985-05-01" .
"1985-05-01 00:01" .
"1985-05-01 00:00" .
"ppublish" .
"J Biochem. 1985 May;97(5):1337-45." .
"eng" .
}}}
==== Pubmed Linked Data @bio2rf ====
http://bio2rdf.org/citations:4030726
{{{
http://bio2rdf.org/citations:4030726
http://bio2rdf.org/bio2rdf_resource:linkedToFrom
http://bio2rdf.org/uniprot:P12343
http://bio2rdf.org/uniprot:P12343_1
http://bio2rdf.org/uniprot:P12343_10
http://bio2rdf.org/uniprot:P12343_6
http://bio2rdf.org/uniprot:P12345
http://bio2rdf.org/uniprot:P12345_1
http://bio2rdf.org/uniprot:P12345_A
http://bio2rdf.org/bio2rdf_resource:url http://bio2rdf.org/html/citations:4030726 (Non-RDF URI)
http://creativecommons.org/ns#license http://bio2rdf.org/license/citations:4030726
http://purl.uniprot.org/core/author
Aki K.
Inoue K.
Kagamiyama H.
Kondo K.
Kuramitsu S.
http://purl.uniprot.org/core/date 1985
http://purl.uniprot.org/core/name J. Biochem.
http://purl.uniprot.org/core/pages 1337-1345
http://purl.uniprot.org/core/title Aspartate aminotransferase isozymes from rabbit liver. Purification and properties.
http://purl.uniprot.org/core/volume 97
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://bio2rdf.org/core:Journal_Citation
http://www.w3.org/2002/07/owl#sameAs http://bio2rdf.org/medline:85289123
http://bio2rdf.org/pubmed:4030726
}}}
==== Pubmed Linked Data @Uniprot ====
http://www.uniprot.org/citations/4030726.rdf
{{{
@prefix
@prefix rdf
@prefix rdfs
@prefix owl
@prefix skos
@prefix pubmed
pubmed:4030726
rdf:type Journal_Citation
title
"Aspartate aminotransferase isozymes from rabbit liver. Purification and
properties."
author "Kuramitsu S."
author "Inoue K."
author "Kondo K."
author "Aki K."
author "Kagamiyama H."
skos:exactMatch
skos:exactMatch pubmed:4030726
date 1985
rdfs:comment
"Cytosolic and mitochondrial isozymes of aspartate aminotransferase
(L-aspartate:2-oxoglutarate aminotransferase [EC 2.6.1.1] ) were
purified to homogeneity from rabbit liver. The rabbit liver isozymes
were closely similar to the corresponding isozymes from other sources,
including human heart, pig heart, chicken heart, and rat liver, in their
molecular weights, absorption spectra, amino acid compositions,
isoelectric points, and Michaelis constants for the substrates. The
NH2-terminal amino acid sequences of rabbit liver isozymes were
identified up to 30 residues, and showed some differences from those of
the corresponding isozymes obtained from other animals so far studied."
name "J. Biochem."
volume 97
pages "1337-1345"
}}}
http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-page+EntryPage+-id+kXl1bEXNu+-e+[MEDLINE:4030726]+-vn+2+-ascii
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&id=11748933,11700088&retmode=xml
----
TextMining