Version 13 (modified by yy, 15 years ago)

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Group activities

  1. Group activities
  2. Hacking, hacking, hacking
    1. Implementation
    2. Accessing existing services
    3. Building RDF (Uniprot style)

Hacking, hacking, hacking

Implementation

  • Make Reflect generate RDFa.
  • Query Whatizit, Reflect and Medie.
  • Get the RDFa data and use RDFa distiller or XSLT Transform to get RDF.
  • Get Pubmed data from TogoWS
  • Get Uniprot RDF
  • Deploy in Sesame
  • Make queries
  • Expose as linked data with Pubby

Accessing existing services

Here is some code:  http://scientifik.info/biohack/code/

Building RDF (Uniprot style)

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#object'), 
 rdflib.URIRef('http://purl.uniprot.org/citations/4030726'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://purl.uniprot.org/core/scope'), 
 rdflib.Literal(u'PROTEIN SEQUENCE'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#Statement'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
 rdflib.URIRef('http://purl.uniprot.org/core/Citation_Statement'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://purl.uniprot.org/core/context'), 
 rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_2'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#subject'), 
 rdflib.URIRef('http://purl.uniprot.org/uniprot/P12345'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate'), 
 rdflib.URIRef('http://purl.uniprot.org/core/citation'))

(rdflib.URIRef('http://purl.uniprot.org/citations/4030726'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
 rdflib.URIRef('http://purl.uniprot.org/core/Journal_Citation'))

(rdflib.URIRef('http://purl.uniprot.org/citations/4030726'), 
 rdflib.URIRef('http://www.w3.org/2004/02/skos/core#exactMatch'), 
 rdflib.URIRef('http://purl.uniprot.org/pubmed/4030726'))

(rdflib.URIRef('http://purl.uniprot.org/citations/4030726'), 
 rdflib.URIRef('http://www.w3.org/2004/02/skos/core#exactMatch'), 
 rdflib.URIRef('http://purl.uniprot.org/medline/85289123'))