= Group activities: Day Three =

[[PageOutline]]

 * TextMiningDayOne
 * TextMiningDayTwo
 * TextMiningDayThree
 * TextMiningDayFour
 * TextMiningReport

= Hacking, hacking, hacking =

== Implementation ==

  * Make [http://reflect.ws/ Reflect] generate RDFa.
  * Query [TextMiningWebservices Whatizit, Reflect and Medie].
  * Get the RDFa data and use RDFa distiller or XSLT Transform to get RDF.
  * Get [http://pubmed.gov Pubmed] data from [http://togows.dbcls.jp/ TogoWS]
  * Get [http://dev.isb-sib.ch/projects/uniprot-rdf/ Uniprot RDF]
  * Deploy in [http://www.openrdf.org/ Sesame]
  * Make queries
  * Expose as linked data with [http://www4.wiwiss.fu-berlin.de/pubby/ Pubby]

== Accessing existing services ==

Here is some code: http://scientifik.info/biohack/code/

== Building RDF (Uniprot style) ==

{{{

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#object'), 
 rdflib.URIRef('http://purl.uniprot.org/citations/4030726'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://purl.uniprot.org/core/scope'), 
 rdflib.Literal(u'PROTEIN SEQUENCE'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#Statement'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
 rdflib.URIRef('http://purl.uniprot.org/core/Citation_Statement'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://purl.uniprot.org/core/context'), 
 rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_2'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#subject'), 
 rdflib.URIRef('http://purl.uniprot.org/uniprot/P12345'))

(rdflib.URIRef('http://www.uniprot.org/uniprot/P12345.rdf#_1'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate'), 
 rdflib.URIRef('http://purl.uniprot.org/core/citation'))

(rdflib.URIRef('http://purl.uniprot.org/citations/4030726'), 
 rdflib.URIRef('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'), 
 rdflib.URIRef('http://purl.uniprot.org/core/Journal_Citation'))

(rdflib.URIRef('http://purl.uniprot.org/citations/4030726'), 
 rdflib.URIRef('http://www.w3.org/2004/02/skos/core#exactMatch'), 
 rdflib.URIRef('http://purl.uniprot.org/pubmed/4030726'))

(rdflib.URIRef('http://purl.uniprot.org/citations/4030726'), 
 rdflib.URIRef('http://www.w3.org/2004/02/skos/core#exactMatch'), 
 rdflib.URIRef('http://purl.uniprot.org/medline/85289123'))

}}}