| Version 16 (modified by alabarga, 15 years ago) |
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Group activities
Available datasets
LODD-related datasets that the LODD group already made available as Linked Data
Example URI of a linked data representation of a Stitch compound: http://www4.wiwiss.fu-berlin.de/stitch/resource/chemicals/1 and a protein: http://www4.wiwiss.fu-berlin.de/stitch/resource/proteins/100018
Available text mining webservices
Modifications to the Reflect service
- Add RDFa to HTML result format
- Add a new function called "getRDF" --> changed to altering getEntities
- Use STITCH URIs to identify Chemicals
Ideas for MEDIE
- An example MEDIE result: http://www-tsujii.is.s.u-tokyo.ac.jp/medie/search.cgi?search_type=semantic_search&verb=activate&object=p53&base_form=verb&ontology=verb
- results are also available as XML that we could transform, but we currently do not know how they identify PubMed? abstracts in their REST URIs
Naming entities
- Use Bio2RDF: http://bio2rdf.org/page/pubmed:4030726 http://bio2rdf.org/page/uniprot:P12343
- You can have linked data
- Use LSRN: http://lsrn.org/UniProt:P08251 http://lsrn.org/PMID:16446403
- It references to the providers' entity page
- HTTP Response is RDF
- Use the providers' official URI http://purl.uniprot.org/uniprot/uniprot:P12343
- not always available
- Create our own
