Group activities: Day Two

• TextMiningDayOne
• TextMiningDayTwo
• TextMiningDayThree
• TextMiningDayFour
• TextMiningReport

Available datasets

 LODD-related datasets that the LODD group already made available as Linked Data

 SPARQL endpoint provided by Bio2RDF

Example URI of a linked data representation of a Stitch compound:  http://www4.wiwiss.fu-berlin.de/stitch/resource/chemicals/1 and a protein:  http://www4.wiwiss.fu-berlin.de/stitch/resource/proteins/100018

Available text mining webservices

 Reflect

 Whatizit

 Medie

Modifications to the Reflect service

• Add RDFa to HTML result format --> DONE
• Add a new function called "getRDF"
• Use STITCH URIs to identify Chemicals --> As for proteins, linking is made using  http://www4.wiwiss.fu-berlin.de/stitch/

Ideas for MEDIE

• An example MEDIE result:  http://www-tsujii.is.s.u-tokyo.ac.jp/medie/search.cgi?search_type=semantic_search&verb=activate&object=p53&base_form=verb&ontology=verb
• <del>results are also available as XML that we could transform, but we currently do not know how they identify PubMed abstracts in their REST URIs</del>
• Refer this page