== Presentation ==

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<div style="width:425px" id="__ss_3352592"><strong style="display:block;margin:12px 0 4px"><a href="http://www.slideshare.net/alabarga/textmining-activities-at-biohackathon-2010" title="Textmining activities at BioHackathon 2010">Textmining activities at BioHackathon 2010</a></strong><object width="425" height="355"><param name="movie" value="http://static.slidesharecdn.com/swf/ssplayer2.swf?doc=textminingactivitiesatbiohackathon2010-100306105642-phpapp01&stripped_title=textmining-activities-at-biohackathon-2010" /><param name="allowFullScreen" value="true"/><param name="allowScriptAccess" value="always"/><embed src="http://static.slidesharecdn.com/swf/ssplayer2.swf?doc=textminingactivitiesatbiohackathon2010-100306105642-phpapp01&stripped_title=textmining-activities-at-biohackathon-2010" type="application/x-shockwave-flash" allowscriptaccess="always" allowfullscreen="true" width="425" height="355"></embed></object><div style="padding:5px 0 12px">View more <a href="http://www.slideshare.net/">presentations</a> from <a href="http://www.slideshare.net/alabarga">Alberto Labarga</a>.</div></div>
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[http://www.slideshare.net/alabarga/textmining-activities-at-biohackathon-2010]

== Use case ==

We performed this query to Pubmed and retrieved 200 pmids.

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The abstracts were annotated  using Whatizit, Reflect and Medie.


and the results converted to RDF using the following convention:

The results are available as RDF here: Whatizit.RDF Reflect.RDf and Medie.RDF.

Pubmed information in RDF format was retrieved for all abstracts using TogoWS, together with Uniprot RDF for the annotated proteins.

== Some relevant links ==

 * [http://bioportal.bioontology.org/]
 * [http://sourceforge.net/projects/texai/files/ Texai project download page] Useful RDF for expressing English (including lexicon, grammars)

 * [SerializationPerlModules About serialization (RDF/XML)]

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