== Presentation ==

[http://www.slideshare.net/alabarga/textmining-activities-at-biohackathon-2010]

== Use case ==

We performed this query to Pubmed and retrieved 200 pmids.

{{{


}}}

The abstracts were annotated  using Whatizit, Reflect and Medie.


and the results converted to RDF using the following convention:

The results are available as RDF here: Whatizit.RDF Reflect.RDf and Medie.RDF.

Pubmed information in RDF format was retrieved for all abstracts using TogoWS, together with Uniprot RDF for the annotated proteins.

== Some relevant links ==

 * [http://bioportal.bioontology.org/]
 * [http://sourceforge.net/projects/texai/files/ Texai project download page] Useful RDF for expressing English (including lexicon, grammars)

 * [SerializationPerlModules About serialization (RDF/XML)]

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