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= Tools =

Creating generic-yet-usable end user tools that work directly with the RDF graph data model.

== Open Bio* ==

 * Common API
  * User-side APIs
  * DB-side APIs (for triple store, Linked Data on the web)

 * Programs
  * Data format converters
  * Tools for import/export/search

 * Projects
  * !BioRuby
  * !BioPython
  * !BioPerl
  * !BioJava
  * !BioLib

== Text mining ==

 * GO !PubMed
   * NER for genes, diseases, drugs
 * MEDIE
 * Query builder from natural language

== End-user software ==

 * Cytoscape
  * RDFScape Plugin
  * BioPAX Reader
 * !BioMart
 * !InterMine
 * Galaxy
 * G-language

[wiki:Tools/EndUserClients Development plan and idea for end-user clients]