Changes between Version 16 and Version 17 of UseCases

Timestamp:

2010/02/09 16:41:28 (14 years ago)

Author:

gordonp

Comment:

--

UseCases

@@ -54 +54 @@
     * The query in Prolog would be something like (simplified so it's depending only on known protein domains, whereas in the publication we built our own domain models):
 
-      probableNovelInteractors(HumanGene1, HumanGene2) :- hasHomolog(HumanGene1, YeastGene1), hasInteractorFromDB(YeastGene1, YeastGene2), hasHomolog(YeastGene2, HumanGene2), hasHomolog(HumanGene2, OtherModelOrganismGene2), hasHomolog(YeastGene2, OtherModelOrganismGene2), hasProteinDomain(HumanGene1, TargetDomain), hasProteinDomain(OtherModelOrganismGene1, TargetDomain), 
-hasInteractorFromDB(OtherModelOrganismGene1, OtherModelOrganismGene2)), \+ hasInteractorFromDB(HumanGene1, HumanGene2).
+      probableNovelInteractors(HumanGene1, HumanGene2) :- hasHomolog(HumanGene1, YeastGene1), hasInteractorFromDB(YeastGene1, YeastGene2), hasHomolog(YeastGene2, HumanGene2), hasHomolog(HumanGene2, OtherModelOrganismGene2), hasHomolog(YeastGene2, OtherModelOrganismGene2), hasProteinDomain(HumanGene1, TargetDomain), hasProteinDomain(OtherModelOrganismGene1, TargetDomain), hasInteractorFromDB(OtherModelOrganismGene1, OtherModelOrganismGene2)), \+ hasInteractorFromDB(HumanGene1, HumanGene2).
 
       probableNovelInteractors(ing1, CandidateInteractor).