UseCases

Participants

(Please add your name!)

* Kazuharu Arakawa * Mark Wilkinson * Francois Belleau * Arek Kasprzyk * Paul Gordon * Yasunori Yamamoto * Akira R. KINJO

Summary

- [ ] use cases

• [ ] myexperiment - flymine
  • [ ] any questions can be more efficient

- [ ] questions that queries over separated DBs

• [ ] using in-house data -> NGS
• [ ] can be in different sources - less cost of integration

- [ ] querying the predicates

• [ ] discovery of DBs
• [ ] hypothesis generation

- [ ] compare how data can be published with existing & SW technology - [ ] interpreted knowledge

• [ ] not numerical?
• [ ] not too raw?
• [ ] linked by predicates (even if numerical)

- [ ] data are linked - [ ] migrate SQL to simple SPARQL endpoints

• [ ] easy to convert 20 lines?
• [ ] convert PDB relational to Sparql (kinjo-san, Fransois)
• [ ] miRbase (raoul)

- [ ] users do not have to know the entire schema - [ ] Paul

• [ ] predict PPI using homologs (PPI in yeast -> homolog in human)

- [ ] formulation of SPARQL queries -> RDFscape

• [ ] can be GUI.

quick note copied from OmniOutliner?. will make it prettier later (gaou)