Changes between Version 2 and Version 3 of VisualizationAndInteraction

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Timestamp:
2010/02/12 17:04:42 (15 years ago)
Author:
baranda
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  • VisualizationAndInteraction

    v2 v3  
    2020Francois also illustrated the use of RelFinder, which is promising, under specific cirumstances (performant endpoint and "local enough" selections) 
    2121 
    22 == MOLECULAR INTERACTIONS == 
     22== Molecular Interactions == 
    2323 
    24 We have been working in trying to make PSICQUIC output RDF/XML. PSICQUIC is a standard that defines a common way to access Molecular Interaction resources (IntAct, MINT, BioGrid, iRefIndex, MatrixDB, Reactome x2, MPIDB, ChEMBL), reaching more than 1.7 milion interactions. 
     24We have been working in trying to make PSICQUIC output RDF/XML. PSICQUIC is a standard that defines a common way to access Molecular Interaction resources (!IntAct, MINT, !BioGrid, iRefIndex, MatrixDB, Reactome x2, MPIDB, ChEMBL), reaching more than 1.7 milion interactions. 
    2525 
    2626http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=STATUS 
    … …  
    3434A test to import the output data into Cytoscape 2.7.0 beta 3 has been successfully done. 
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    36 ABOUT OTHER PSI FORMATS 
     36=== About other PSI formats === 
    3737 
    3838PSI-MI XML is one of the PSI (Proteomics Standards Initiative) formats. There are other standard formats to manage mass spectrometry data (mzML), data analysis (analysisML) or sample preparations (spML). These may be converted to RDF equivalent formats in the future. Next month is taking place the PSI Meeting in Seoul, where this may be discussed.