Changes between Version 4 and Version 5 of VisualizationAndInteraction

Timestamp:

2010/02/12 17:19:34 (15 years ago)

Author:

baranda

Comment:

--

VisualizationAndInteraction

@@ -31 +31 @@
 == Molecular Interactions ==
 
-We have been working in trying to make [http://psicquic.googlecode.com PSICQUIC] output RDF/XML. PSICQUIC is a standard that defines a common way to access Molecular Interaction resources (!IntAct, MINT, !BioGrid, iRefIndex, MatrixDB, Reactome x2, MPIDB, ChEMBL), reaching more than 1.7 milion interactions. 
-
- * PSICQUIC: http://psicquic.googlecode.com
- * PSICQUIC registry: http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=STATUS
+We have been working in trying to make [http://psicquic.googlecode.com PSICQUIC] output RDF/XML. PSICQUIC is a standard that defines a common way to access Molecular Interaction resources (!IntAct, MINT, !BioGrid, iRefIndex, MatrixDB, Reactome x2, MPIDB, ChEMBL), reaching [http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=STATUS more than 1.7 milion] interactions. 
 
 The approach taken has been to try to make PSICQUIC services return BioPAX Level 3 data. As the underlying data is PSI-MI XML, a converter has been created using JENA.
@@ -47 +44 @@
  * Add all the data available in PSI-MI XML to the output.
 
-A test to import the output data into Cytoscape 2.7.0 beta 3 has been successfully done.
+A test to import the output data into Cytoscape 2.7.0 beta 3 has been successfully done. [http://hackathon3.dbcls.jp/attachment/wiki/VisualizationAndInteraction/psicquicBiopaxCytoscape.JPG [Image]]
 
 === Note about other PSI formats ===