| 40 | | * [wiki:Tools] |
| 41 | | * Open Bio* -- "creating generic-yet-usable end user tools that work directly with the RDF graph data model" |
| 42 | | * [wiki:Stores] |
| 43 | | * [http://virtuoso.openlinksw.com Virtuoso] [http://4store.org/ 4store] AllegroGraph [http://www.openrdf.org/ Sesame] [http://jena.sourceforge.net/ Jena] [http://librdf.org Redland] [http://mulgara.org Mulgara] [http://sourceforge.net/projects/bigdata/ bigdata] |
| 44 | | * RDB, Key-value store? |
| 45 | | * [wiki:Interfaces] |
| 46 | | * SPARQL |
| 47 | | * [http://relfinder.semanticweb.org/ RelFinder] [http://www.sheaflight.com/browser/ Sheaflight] [http://visinav.deri.org/ VisiNav] [http://www.simile-widgets.org/exhibit SIMILE/Exhibit] |
| 48 | | * !InterMine |
| 49 | | * Galaxy |
| 50 | | * !BioMart |
| 51 | | * Cysoscape |
| 52 | | |
| 53 | | * To realize semantic search framework |
| 54 | | * To establish High-performance storage system for semantic data |
| 55 | | * To federate Linked Data |
| 56 | | * To use, reuse, mashup and mix the biological data on Semantic Web |
| 57 | | |
| 58 | | * how to re-organize existing databases |
| 59 | | * how to semantically annotate data (id, link, ontology) |
| 60 | | * how to store and search triples |
| 61 | | * how to utilize triples in open bio* |
| 62 | | * how to query biological questions and get results |
| 63 | | * how to scale for large amount of data |
| 64 | | * how to utilize via web services |
| 65 | | * how to visualize (what kind of user interface is required) |
| | 40 | * [wiki:Stores] |
| | 41 | * Survey existing or develop our own extensible storage systems for RDF triples and functional query interface. |
| | 42 | * [wiki:Tools] |
| | 43 | * Common APIs among Open Bio* projects for RDF stores and SPARQL endpoints. |
| | 44 | * Develop a set of programs including loaders and converters for RDF data. |
| | 45 | * Develop supporting text mining systems and end-user applications. |
