Changes between Version 6 and Version 7 of Queries

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Timestamp:
2009/12/18 02:29:52 (9 years ago)
Author:
ktym
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  • Queries

    v6 v7  
    33Targeted queries to be resolved by Semantic Web technologies. 
    44 
    5 One of our goal would be to implement an advanced search engine -- something like a Wolfram Alpha for biology. In this page, we will gather meaningful and challenging queries for the Semantic Web technology and will define some goals of the BioHackathon 2010 from them. 
     5One of our goal would be to implement an advanced search engine -- something like a Wolfram Alpha for biology. In this page, we will gather meaningful and challenging queries for the Semantic Web technology and will define some goals of the !BioHackathon 2010 from them. 
    66 
    77=== Expected query types === 
     
    3737=== From [http://www.flymine.org/release-20.0/templates.do FlyMine Templates] === 
    3838 
    39 InterMine/FlyMine provides a curated set of typical query templates. As these are checked by the biologists, most of them seems to be meaningful compared to computationally generated queries based on combinations of available resources. 
     39!InterMine/FlyMine provides a curated set of typical query templates. As these are checked by the biologists, most of them seems to be meaningful compared to computationally generated queries based on combinations of available resources. 
    4040 
    4141 * Disease [Human] --> Genes + D. melanogaster homologues (filter on BLAST E-Value). 
     
    4343 
    4444 * EST clone [A. gambiae] --> Chromosomal location + Gene + D. melanogaster orthologue + Pathway. 
    45    * For a particular A. gambiae EST clone, show its chromosomal location, the corresponding A. gambiae gene, the D. melanogaster orthologue and the pathway. (Data Source: VectorBase, InParanoid, KEGG, Reactome, FlyReactome). 
     45   * For a particular A. gambiae EST clone, show its chromosomal location, the corresponding A. gambiae gene, the D. melanogaster orthologue and the pathway. (Data Source: !VectorBase, !InParanoid, KEGG, Reactome, !FlyReactome). 
    4646 
    4747